View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_low_5 (Length: 451)
Name: NF11167_low_5
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 6195056 - 6195483
Alignment:
| Q |
18 |
tcatcttggtgaatgtgtcggcacttaaaggcaaatcattattttgtgacaaatccaatgttatgccttcaattgagctactcccctgacaagacaagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6195056 |
tcatcttggtgaatgtgtcggcacttaaaggcaaatcattattttgtgacaaatccaatgttatgccttcaattgagctactcccctgacaagagaagaa |
6195155 |
T |
|
| Q |
118 |
agtaaatgtatccaatcaattagctacattaactaatttgtattagaaatttagctgtgttgaaaagtgtatgtttttcattcccttaccttgttttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6195156 |
agtaaatgtatccaatcaattagctacattaactaatttgtattagaaatttagctatgttgaaaagtgtatgtttttcattcccttaccttgttttctt |
6195255 |
T |
|
| Q |
218 |
caataactgcacgagctttactcccactcagtcgggtatgtgctgccgggtcctcgccacaatcattacatattatgtctgaacccattttttgcagcaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
6195256 |
caataactgcacgagctttactcccactcagtcgggtatgtgctgccgggtcctcgccacaatcattacatattatgtccgaacccattttttgcagtaa |
6195355 |
T |
|
| Q |
318 |
gtcatgcatttgtattgtttggttatttgagatagttatcaaagccttgtctttgaggactactattccgctatttggttcgaagccacaagcatctagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6195356 |
gtcatgcatttgtattgtttggttatttgagatagttatcaaagccttgtctttgaggactactattccgctatttggttcgaaaccacaagcatctagt |
6195455 |
T |
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| Q |
418 |
atctttgtgacagactctttcttctctc |
445 |
Q |
| |
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||||||||||||||||||||||| |||| |
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| T |
6195456 |
atctttgtgacagactctttcttttctc |
6195483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 6070779 - 6071175
Alignment:
| Q |
18 |
tcatcttggtgaatgtgtcggcacttaaaggcaaatcattattttgtgacaaatccaatgttatgccttcaattgagctactcccctgacaagacaagaa |
117 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| || |||||||| |
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| T |
6070779 |
tcatcttgctgaatgtgtcggcacttaaagataaatcattattttgagacaaatccaacattatgccttcaatgaagctactcccctg-caggacaagaa |
6070877 |
T |
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| Q |
118 |
agtaaa-tgtatccaatcaattagctacattaactaatttgtattagaaatttagctgtgttgaaaag--tgtatgtttttcattcccttaccttgtttt |
214 |
Q |
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|||||| | |||||||| |||| | ||| || | ||| | ||| |||||| |||||||||||| ||| ||||||| | ||||||||||||||| |
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| T |
6070878 |
agtaaaatttatccaattaattggttacgtt---ttattaga--tagtaatttaactgtgttgaaaaaaatgtcagtttttcttccccttaccttgtttt |
6070972 |
T |
|
| Q |
215 |
cttcaataactgcacgagctttactcccactcagtcgggtatgtgctgccgggtcctcgccacaatcattacatattatgtctgaacccattttttgcag |
314 |
Q |
| |
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||||||| || || |||||| || ||||||||||||||||||| ||| |||||| ||||| |||||| ||||| ||| |||||||||||||| || |
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| T |
6070973 |
cttcaattacatcaagagcttctcttccactcagtcgggtatgtgttgcagggtccgtgccacgatcattgcatat---gtccgaacccattttttgtag |
6071069 |
T |
|
| Q |
315 |
caagtcatgcatttgtattgtttggttatttgagatagttatcaaagccttgtctttgaggactactattccgctatttggttcgaagccacaagcatct |
414 |
Q |
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||| || |||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||| | ||| ||| |||||| ||||||||||| |
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| T |
6071070 |
caaatcgtgcatttgaattgtatggtcatttgagatagttatcaaagccatgtctttgaggactactatttcactacttgcttcgaaatcacaagcatct |
6071169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 203 - 445
Target Start/End: Complemental strand, 37451735 - 37451493
Alignment:
| Q |
203 |
ttaccttgttttcttcaataactgcacgagctttactcccactcagtcgggtatgtgctgccgggtcctcgccacaatcattacatattatgtctgaacc |
302 |
Q |
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||||||||||||||||||| ||| || |||| | ||||||||||| ||||||| ||| ||||| || ||||||||||||||||||||||| ||||| |
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| T |
37451735 |
ttaccttgttttcttcaattacttcaaaagctgctgttccactcagtcgtgtatgtgttgcagggtcttcaccacaatcattacatattatgtccgaacc |
37451636 |
T |
|
| Q |
303 |
cattttttgcagcaagtcatgcatttgtattgtttggttatttgagatagttatcaaagccttgtctttgaggactactattccgctatttggttcgaag |
402 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| || |||||||| || |
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| T |
37451635 |
cattttctgcagcaagtcatgcatttgtattgtatggttatttgagacagttatcaaagccttgtctttgaggacaactattccactgtttggttcaaaa |
37451536 |
T |
|
| Q |
403 |
ccacaagcatctagtatctttgtgacagactctttcttctctc |
445 |
Q |
| |
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||||||||||||||||||||||| ||| ||||||||| |||| |
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| T |
37451535 |
ccacaagcatctagtatctttgtcacacgctctttcttttctc |
37451493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 37451902 - 37451810
Alignment:
| Q |
18 |
tcatcttggtgaatgtgtcggcacttaaaggcaaatcattattttgtgacaaatccaatgttatgccttcaattgagctactcccctgacaag |
110 |
Q |
| |
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|||||||||||||||| |||| | ||||||| ||| |||| ||||| ||||||||||| |||| ||||||||||||||||||||||| |||| |
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| T |
37451902 |
tcatcttggtgaatgtatcggaagttaaaggtaaaacattgttttgagacaaatccaacattatcccttcaattgagctactcccctggcaag |
37451810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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