View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11167_low_6 (Length: 412)
Name: NF11167_low_6
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 394
Target Start/End: Original strand, 38330680 - 38331054
Alignment:
| Q |
23 |
ttagatcgcatgttttaagacacatgctaatttgtgcgcaaaatatgcaccannnnnnnnnnnnnngacaaatgataaatatgtaacatctttagtgatc |
122 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38330680 |
ttagatcgcatgttttaggacacatgctaatttgtgcgcaaaatatgtaccattttttttttt---gacaaatgataaatatgtaacatctttagtgatc |
38330776 |
T |
|
| Q |
123 |
gatccgtcattagaaaaagtatgtttgatgatgcaagaatattatattaacggtttggatttgtttagttgcttattcaattatttgcttctattaacat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38330777 |
gatccgtcattagaaaaagtatgtttgatgatgcaagaatattatattaacggtttggatttgtttagttgcttattcaattatttgcttatattaacat |
38330876 |
T |
|
| Q |
223 |
ggtttattagatattcttggtgcgtggcattaagataccctatccacgtaatctcaacaatataatacgagcattccaagaccataaacacaatcca--- |
319 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38330877 |
ggtttattagatattctcggtgcgtggcattaagataccctatccacgcaatctcaacaatataatacgagcattccaagaccataaacgcaatccaata |
38330976 |
T |
|
| Q |
320 |
---atannnnnnnggtagatcaatccaatattttttattgagtaaaaaagaaaatagtggtaatatattcgacaaggt |
394 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38330977 |
tatatatttttttggtagatcaatccaatattttttattgagtaaaaaagaaaatagtggtaatatattcgacaaggt |
38331054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University