View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11167_low_7 (Length: 411)

Name: NF11167_low_7
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11167_low_7
NF11167_low_7
[»] chr4 (33 HSPs)
chr4 (116-395)||(54976253-54976531)
chr4 (116-395)||(38023846-38024144)
chr4 (116-395)||(29191520-29191816)
chr4 (144-395)||(6884381-6884651)
chr4 (202-395)||(37564288-37564480)
chr4 (122-395)||(55874068-55874355)
chr4 (119-395)||(22443059-22443353)
chr4 (202-395)||(41279655-41279846)
chr4 (202-395)||(42738994-42739185)
chr4 (202-395)||(49283513-49283710)
chr4 (202-395)||(1921711-1921902)
chr4 (202-395)||(29119377-29119570)
chr4 (202-372)||(47498136-47498306)
chr4 (205-388)||(8067407-8067587)
chr4 (44-116)||(39220342-39220414)
chr4 (44-116)||(39226868-39226940)
chr4 (44-114)||(47113167-47113237)
chr4 (44-116)||(236296-236369)
chr4 (204-363)||(27651248-27651406)
chr4 (44-116)||(40053724-40053797)
chr4 (44-116)||(40052489-40052562)
chr4 (119-210)||(37564492-37564573)
chr4 (116-210)||(1921914-1922007)
chr4 (176-339)||(51576560-51576736)
chr4 (148-210)||(49283439-49283501)
chr4 (317-390)||(47968718-47968791)
chr4 (116-207)||(49318717-49318809)
chr4 (161-204)||(42738933-42738976)
chr4 (142-207)||(30548623-30548689)
chr4 (159-205)||(47498323-47498369)
chr4 (116-157)||(36668418-36668459)
chr4 (161-206)||(41279862-41279907)
chr4 (162-210)||(19441889-19441937)
[»] chr7 (14 HSPs)
chr7 (116-395)||(29007957-29008241)
chr7 (202-395)||(42027343-42027535)
chr7 (202-395)||(12313281-12313469)
chr7 (202-378)||(1828483-1828658)
chr7 (202-395)||(44118479-44118666)
chr7 (202-395)||(33119205-33119396)
chr7 (116-309)||(47646056-47646269)
chr7 (120-210)||(12313174-12313269)
chr7 (111-210)||(1828670-1828759)
chr7 (116-207)||(16729970-16730061)
chr7 (161-210)||(44118418-44118467)
chr7 (273-373)||(40040968-40041067)
chr7 (339-395)||(47646002-47646058)
chr7 (120-153)||(42027270-42027303)
[»] chr5 (21 HSPs)
chr5 (116-395)||(16617676-16617974)
chr5 (116-395)||(30404035-30404335)
chr5 (119-384)||(18672692-18672975)
chr5 (129-395)||(35384686-35384971)
chr5 (202-395)||(37276506-37276698)
chr5 (118-395)||(11725878-11726173)
chr5 (119-395)||(10329037-10329327)
chr5 (202-395)||(1751873-1752064)
chr5 (116-395)||(2956104-2956402)
chr5 (44-116)||(5911032-5911104)
chr5 (44-116)||(35417198-35417270)
chr5 (44-116)||(38486486-38486559)
chr5 (44-116)||(5917980-5918052)
chr5 (48-115)||(36100143-36100210)
chr5 (44-114)||(6751377-6751447)
chr5 (161-210)||(1752076-1752125)
chr5 (161-208)||(37276705-37276752)
chr5 (150-207)||(7711711-7711768)
chr5 (116-157)||(15295388-15295429)
chr5 (284-345)||(33674257-33674318)
chr5 (38-114)||(41194005-41194081)
[»] chr2 (19 HSPs)
chr2 (116-395)||(10356181-10356479)
chr2 (116-395)||(28809236-28809537)
chr2 (116-395)||(35733863-35734156)
chr2 (202-391)||(7758615-7758803)
chr2 (117-395)||(16256719-16257017)
chr2 (223-385)||(16255910-16256070)
chr2 (202-395)||(43589242-43589434)
chr2 (259-395)||(34209835-34209971)
chr2 (38-116)||(20471603-20471681)
chr2 (147-210)||(7758540-7758603)
chr2 (116-210)||(43589136-43589230)
chr2 (184-273)||(39576466-39576560)
chr2 (143-207)||(31916914-31916978)
chr2 (120-210)||(34209706-34209790)
chr2 (204-280)||(31916995-31917070)
chr2 (116-210)||(43582594-43582686)
chr2 (264-372)||(35860912-35861020)
chr2 (116-209)||(26275494-26275582)
chr2 (165-210)||(34041881-34041926)
[»] chr1 (27 HSPs)
chr1 (116-395)||(51621131-51621428)
chr1 (118-395)||(46833719-46834006)
chr1 (116-392)||(15545035-15545330)
chr1 (150-395)||(261031-261290)
chr1 (202-395)||(2326201-2326393)
chr1 (116-395)||(29743963-29744257)
chr1 (116-395)||(44565579-44565877)
chr1 (122-395)||(42887179-42887466)
chr1 (202-395)||(49622268-49622457)
chr1 (202-395)||(33506234-33506426)
chr1 (202-395)||(21373341-21373532)
chr1 (202-392)||(17306965-17307155)
chr1 (202-395)||(37661336-37661526)
chr1 (116-271)||(11385502-11385675)
chr1 (44-116)||(16860257-16860330)
chr1 (44-116)||(19406131-19406204)
chr1 (116-210)||(341027-341115)
chr1 (44-116)||(40772425-40772498)
chr1 (202-247)||(341122-341167)
chr1 (152-201)||(2326131-2326180)
chr1 (116-201)||(33506447-33506532)
chr1 (228-271)||(5154302-5154344)
chr1 (282-328)||(27867419-27867465)
chr1 (116-201)||(5153542-5153622)
chr1 (270-339)||(15431110-15431179)
chr1 (154-280)||(50376752-50376884)
chr1 (116-154)||(49622177-49622215)
[»] scaffold0735 (1 HSPs)
scaffold0735 (122-395)||(132-419)
[»] chr8 (16 HSPs)
chr8 (116-395)||(43634181-43634478)
chr8 (202-395)||(2956511-2956703)
chr8 (202-395)||(36557612-36557804)
chr8 (202-395)||(40978115-40978306)
chr8 (202-395)||(43048454-43048645)
chr8 (202-387)||(21594602-21594792)
chr8 (305-395)||(6610253-6610343)
chr8 (202-302)||(6602401-6602501)
chr8 (202-302)||(6677854-6677954)
chr8 (115-210)||(6602304-6602389)
chr8 (115-210)||(6677757-6677842)
chr8 (38-111)||(21593489-21593563)
chr8 (119-209)||(40978319-40978409)
chr8 (121-210)||(43048657-43048746)
chr8 (116-210)||(2956715-2956799)
chr8 (161-208)||(36557819-36557866)
[»] chr6 (7 HSPs)
chr6 (202-395)||(20219548-20219741)
chr6 (202-395)||(22113573-22113766)
chr6 (202-395)||(11455688-11455880)
chr6 (116-204)||(20219759-20219842)
chr6 (116-204)||(22113784-22113867)
chr6 (161-210)||(11455892-11455941)
chr6 (116-157)||(10838799-10838840)
[»] chr3 (11 HSPs)
chr3 (202-395)||(46484885-46485076)
chr3 (44-116)||(10567648-10567720)
chr3 (44-116)||(10570898-10570970)
chr3 (44-116)||(29672670-29672743)
chr3 (46-116)||(20283852-20283923)
chr3 (247-313)||(26103549-26103614)
chr3 (116-155)||(46484789-46484828)
chr3 (204-262)||(104822-104880)
chr3 (287-373)||(29085435-29085520)
chr3 (177-210)||(55079014-55079047)
chr3 (117-153)||(42168148-42168184)
[»] scaffold1251 (1 HSPs)
scaffold1251 (248-395)||(112-258)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 54976531 - 54976253
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggagcaaaa 215  Q
    |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54976531 gggtccgtttggttcgcgggttttgaagtggaggggaggtgaagggagggaatattttaaaaattttgtgtttggttcaatttttagaagggg-gcaaaa 54976433  T
Q  216 tccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacattga 315  Q
    || |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54976432 tctctcataagctcatttattgctccccctcaaattgaagtttttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacattga 54976333  T
Q  316 cataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  54976332 cataattatcctcatgtttatttttaaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 54976253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 116 - 395
Target Start/End: Original strand, 38023846 - 38024144
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||         
T  38023846 gggtccgtttggttcgcgggttttgaagtggaggggaggggaagggaggaaatattttaaaaattttgtgtttggttcaatttttagaaggggaggggag 38023945  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  38023946 ggagaggaaggggagcaaaatccctcataagttcatttattgctccccctcaaattggagt-tttttggaggggaggagagggaaagagagatgagttaa 38024044  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||| |||||    
T  38024045 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaaaccgttcttattaaaaatttaagtgttttcaacgtattgtttatt 38024144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 29191816 - 29191520
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||||||         
T  29191816 gggttcgtttggttcgcgggttttgaaggggaggggaggggaagggagagaatattttaaaaatt--gtgtttggttcaatttttagaaggggaggagag 29191719  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29191718 ggagaggaaggggagcaaaatctctcataagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaa 29191620  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  29191619 tgcaattttaatcacattgacataattatcatcatgtttatttttaaatgacaaatccgtccttattaaaaatttaagtgttttcaacatattacttatt 29191520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 144 - 395
Target Start/End: Original strand, 6884381 - 6884651
Alignment:
Q  144 gggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttag--------------------aaggggagcaaaatccctcat 223  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||                    |||||||||||||| ||||||    
T  6884381 gggaggggaggggaagggagggaatattttaaaaaatttgtgtttggttcaatttttaggaggggaggggagggagaggaaggggagcaaaattcctcat 6884480  T
Q  224 aagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacattgacataatta 323  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  6884481 aagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagagagacgagttaatgcaatttaaattacattgacataatta 6884579  T
Q  324 tcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  6884580 tcctcatgtttatttttaaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 6884651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 37564480 - 37564288
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37564480 gaaggggagcaaattccctcataagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaatgcaat 37564382  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||    
T  37564381 tttaattagattgacataattatcctcatgtttatttttaaatgacaaaactgtccttattaaaaatttaagtgttttcaacatattgcttatt 37564288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 122 - 395
Target Start/End: Complemental strand, 55874355 - 55874068
Alignment:
Q  122 gtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----------- 210  Q
    ||||||||| | |||||||||||||||||||| ||| | ||| ||||||||||||  ||||||||||||||||||||||||||||||||               
T  55874355 gtttggttcacaggttttgaaggggaggggagaggatgggagagaatattttaaattttttgtgtttggttcaatttttagaaggggagggaaatgaagg 55874256  T
Q  211 ----caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaa 306  Q
        ||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55874255 gaagcaaaatccctcataaactcatttactgctccccttcaaattggagt-tttttggaggggaggggagggaaagaaagatgagttaatgcaattttaa 55874157  T
Q  307 ttacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||| || |||||||||||| ||||||  | || |||||||||| |||||||||||||||||||||||||||    
T  55874156 ttacattgacataattatccttatatttatttttaaaagacaaaatcatcattattaaaaatttaagtgttttcaacatattgcttatt 55874068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 119 - 395
Target Start/End: Original strand, 22443059 - 22443353
Alignment:
Q  119 tccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaagggga--------- 209  Q
    ||||||||||||| ||||||||| ||||||||||||||| |  |||||||||||||||  | |||||||||||||||||||||||||||||             
T  22443059 tccgtttggttcgggggttttgatggggaggggaggggagggaagggaatattttaaatttgttgtgtttggttcaatttttagaaggggatgggaggga 22443158  T
Q  210 -----------gcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgc 298  Q
               ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  22443159 gaggaaggtgagcaaaatccctcaaaagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagataaatgagttaatgc 22443257  T
Q  299 aattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||| || ||||||||||| ||||||||||||    
T  22443258 aattttaattacgttgacataattatcctcatatttatttttaaataacaaaatcgtccttattaaaaa-tttagtgttttcaatatattgcttatt 22443353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 41279846 - 41279655
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  41279846 gaaggagagcaaaatccctcataagctcatttattgctcccc-tcaaattggagt-tttttggaggggaggggagggaaagaaaaatgagttaatgcaat 41279749  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||||| ||||||| |||||||||||||||||||    
T  41279748 tttaattacattgacattattatcctcatatttatttttaaatgacaaaatcgtccttattaaaaatttaagtgctttcaacatattgcttatt 41279655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 42738994 - 42739185
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||| |||    
T  42738994 gaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagataaatgatttaatgtaat 42739092  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  ||||||||||||||| ||| |||||||||| ||||||||||||    
T  42739093 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatcgtccttattaaaaa-ttaggtgttttcaatatattgcttatt 42739185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 49283513 - 49283710
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttt----tggaggggaggggagggaaagagagatgagttaatg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||     ||||||||||||||||||||| | |||||||||||    
T  49283513 gaaggggagcaaaatccctcataagctcatttattgctcccccttaaattggagttttttggaggggaggggaggggagggaaagataaatgagttaatg 49283612  T
Q  298 caattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||  | | ||||||||| | |||||||||||||| ||||||||||||    
T  49283613 caattttaattacattgacataattatcctcatatttatttttaaatgtcaaaatcattcttattaaatatttaagtgttttcaatatattgcttatt 49283710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 1921902 - 1921711
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| | |||||||||||  ||    
T  1921902 gaaggggagcaaaatccctcaaaaactcatttattgctcccc-tcaaattggagc-tttttggaggggaggggagggaaagataaatgagttaatgatat 1921805  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| || ||  ||||||||||||||| |||||||||||||| ||||||||||||    
T  1921804 tttaattacgttgacataattatcctcatatttatttttaaataacgaaatcgtccttattaaaaatttaagtgttttcaatatattgcttatt 1921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 29119570 - 29119377
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  | | | |||||||||||||    
T  29119570 gaaggagagcaaaatccctcgtaagctcatttattgctccccctcaaattggagt-tttttggaggggaggtgagggaatcataaacgagttaatgcaat 29119472  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaa-cttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||  | |||||||||||||  |||||||||||||| |||||| |||||    
T  29119471 tttaattacattcacataattatcctcatatttatttttaaatgacaaaatcatccttattaaaaattttaagtgttttcaatatattgtttatt 29119377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 202 - 372
Target Start/End: Complemental strand, 47498306 - 47498136
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||| ||||||||||||  || ||||||||| || || ||||    
T  47498306 gaaggggagcaaaatccctcgtaaactcatttattgcttcccctcaaattggagtttttttgaaggggaggggagacaaggagagatgaattgatacaat 47498207  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaa 372  Q
    |||||||| |||||||||||||||||||| |||||||| ||||   |||  ||||||||||||||| ||||    
T  47498206 tttaattatattgacataattatcctcatatttattttaaaatagaaaagtcgtccttattaaaaatttaa 47498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 205 - 388
Target Start/End: Complemental strand, 8067587 - 8067407
Alignment:
Q  205 ggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaatttt 304  Q
    |||||||||||||  ||||||||||||||| | || ||||  |||||||||| ||||||||||| || ||||| ||||||||| |||||||| |||||||    
T  8067587 ggggagcaaaatcattcataagctcatttactacttcccc--aaattggagt-tttttggagggaagaggaggaaaagagagacgagttaatacaatttt 8067491  T
Q  305 aattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatatt 388  Q
    ||||| || ||||||||||||||||| ||||| |||||||||||||   |||||||||||||| |||||| ||||||| |||||    
T  8067490 aattatatagacataattatcctcatatttatgtttaaatgacaaaattgtccttattaaaaatttaagtattttcaatatatt 8067407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 39220414 - 39220342
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||    
T  39220414 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctacg 39220342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 39226940 - 39226868
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||    
T  39226940 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctacg 39226868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 47113167 - 47113237
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactcta 114  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||    
T  47113167 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactcta 47113237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 236369 - 236296
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  236369 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacg 236296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 204 - 363
Target Start/End: Original strand, 27651248 - 27651406
Alignment:
Q  204 aggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaa-gagagatgagttaatgcaatt 302  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||| |  |||||| ||  |||  ||| ||||| || | ||||||||||  |||     
T  27651248 aggggagcaaaatccctcataaactcatttattgctccccttcaaattgaa--gttttttgatcggaaaggatggaaatgataaatgagttaataaaata 27651345  T
Q  303 ttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttatta 363  Q
    |||| || |||||||||||||||||||| |||||||| ||||| ||||   ||||||||||    
T  27651346 ttaactatattgacataattatcctcatatttattttaaaatgtcaaagttgtccttatta 27651406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 40053797 - 40053724
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  40053797 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacg 40053724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 40052489 - 40052562
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  40052489 ttagatacaaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacg 40052562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 37564573 - 37564492
Alignment:
Q  119 tccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||||| ||||||||||||||||||          ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37564573 tccgtttggttcgcaggttttgaaggggagggg----------agggaatattttaaaaaatttgtgtttggttcaatttttagaaggggag 37564492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 1922007 - 1921914
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||||||| ||||||||| ||||||||||||| | |  ||  |||||||||||  | ||||||||||||||||||||||||||||||    
T  1922007 gggtccgtttggttcg-gggttttgatggggaggggagggaagggaagataatattttaaatttgttgtgtttggttcaatttttagaaggggag 1921914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 339
Target Start/End: Original strand, 51576560 - 51576736
Alignment:
Q  176 aaattttgtgtttggttcaatttttagaagggga---------gcaaaat-ccctcataagctcatttattgctccccctcaaattggagtgtttttgga 265  Q
    |||| |||||||||||||||| ||||||||||||         ||||||| ||||||||| |||||||||||||||   | |||||| | | ||||||||    
T  51576560 aaatattgtgtttggttcaatctttagaaggggaagagagtgagcaaaattccctcataaactcatttattgctcctttt-aaattgaattatttttgga 51576658  T
Q  266 ggggaggggagggaaagaga----gatgagttaatgcaattttaattacattgacataattatcctcatgtttatttt 339  Q
    | ||| |||||||||||| |    ||||| ||||| |||||||||||| || ||||||||||||||||| ||||||||    
T  51576659 gaggatgggagggaaagatatatagatgaattaatacaattttaattatatagacataattatcctcatatttatttt 51576736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 49283439 - 49283501
Alignment:
Q  148 ggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||| ||| ||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  49283439 ggggagaggaggagagggaatattttaaatttgttgtgtttggttcaatttttagaaggggag 49283501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 47968791 - 47968718
Alignment:
Q  317 ataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgc 390  Q
    ||||||||| || | ||||||||||||||| |||  | ||||||||||||| |||| |||||| ||||||||||    
T  47968791 ataattatcttcgtatttatttttaaatgataaaatcatccttattaaaaatttaaatgtttttaacatattgc 47968718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 49318809 - 49318717
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaatt-ttgtgtttggttcaatttttagaaggg 207  Q
    |||||||||||||||| | |||||| |||||||||||||| | | ||||| |||||||  || ||   |||||||||| ||||||||||||||    
T  49318809 gggtccgtttggttcgagagttttggaggggaggggagggaaggggaggggatattttttaatttgaagtgtttggtttaatttttagaaggg 49318717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 42738933 - 42738976
Alignment:
Q  161 gagggaatattttaaaaattttgtgtttggttcaatttttagaa 204  Q
    ||||||||||||||||  | ||||||||||||||||||||||||    
T  42738933 gagggaatattttaaatttcttgtgtttggttcaatttttagaa 42738976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 30548689 - 30548623
Alignment:
Q  142 aggggaggggaggggaagagagggaatattttaaaaatt-ttgtgtttggttcaatttttagaaggg 207  Q
    |||||||||||| ||||| ||||||||||||| ||  ||  |||||||||||||| |||||||||||    
T  30548689 aggggaggggagtggaagggagggaatatttttaagtttgatgtgtttggttcaagttttagaaggg 30548623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 47498369 - 47498323
Alignment:
Q  159 gagagggaatattttaaaaattttgtgtttggttcaatttttagaag 205  Q
    ||||||||  ||||||||  |||||||||||||||||||||||||||    
T  47498369 gagagggataattttaaattttttgtgtttggttcaatttttagaag 47498323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 36668459 - 36668418
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggagggga 157  Q
    |||||||||||||||| | |||||| ||||||||||||||||    
T  36668459 gggtccgtttggttcgagagttttggaggggaggggagggga 36668418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 41279907 - 41279862
Alignment:
Q  161 gagggaatattttaaaaattttgtgtttggttcaatttttagaagg 206  Q
    ||||| ||||||||||  |||||| |||||||||||||||||||||    
T  41279907 gaggggatattttaaattttttgtatttggttcaatttttagaagg 41279862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 19441889 - 19441937
Alignment:
Q  162 agggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||||||  |||||||||| ||||||||| ||||| |||||    
T  19441889 agggaatattttaaattttttgtgttttgttcaatttgtagaaagggag 19441937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 116 - 395
Target Start/End: Original strand, 29007957 - 29008241
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgttt-ggttcaatttttagaaggggag---- 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||        
T  29007957 gggtctgtttggttcgcgggttttgaaggggaggggaggggaagggagggaatattttaaaaattttgtgttttggttcaatttttagaaggggagggga 29008056  T
Q  211 -caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaatta 309  Q
     |||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29008057 gcaaaatccctcataagttaatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaatgcaattttaatta 29008155  T
Q  310 cattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  29008156 cattgacataattatcctcatgtttatttttaaatgataaatccgtccttattaaaaatttaagtgttttcaacatattacttatt 29008241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 42027343 - 42027535
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||    
T  42027343 gaaggggagcaaaatttatcataagctcatttattgctccccctcaaattgaagt-tttttggaggggaggggagggaaagaaagatgagttaatgcaat 42027441  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||  |||| |||||||||| ||||||| |||||||||||||||||||    
T  42027442 tttaattacattgacataattattttcatatttatttttaaatgacaaaatcgtcattattaaaaatttaagtgctttcaacatattgcttatt 42027535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 12313281 - 12313469
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     |||||||||||| | |||| ||||||||||    
T  12313281 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtttttttggag-----gggagggaaagataaatgatttaatgcaat 12313375  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||  || ||||||||||||||||  | ||||||||||||| |||||||||||||| |||||| |||||    
T  12313376 tttaattatattgacataattatcctcacattcatttttaaatgacaaaatcatccttattaaaaatttaagtgttttcaatatattgtttatt 12313469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 202 - 378
Target Start/End: Complemental strand, 1828658 - 1828483
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||| ||||||||||    
T  1828658 gaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagt-tttttggaggggagaggagggaaagataaatgatttaatgcaat 1828560  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttt 378  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  |||||||||| |||| ||||||||||    
T  1828559 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatcgtccttatttaaaatttaagtgttt 1828483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 44118479 - 44118666
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||      |||||||||||||||| | |||| ||||||||||    
T  44118479 gaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagtgtttt------ggaggggagggaaagataaatgatttaatgcaat 44118572  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||   || ||||||||||| |||||||||||||| ||||||||||||    
T  44118573 tttaattatattgacataattatcctcatattcatttttaaatgacaaaattgttcttattaaaaatttaagtgttttcaatatattgcttatt 44118666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 33119396 - 33119205
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||||||| | |||| ||||||||||    
T  33119396 gaaggggagcaaaatcccttataagtttatttattgctccccctcaaattgaagt-tttttggaggggaggaaagggaaagataaatgatttaatgcaat 33119298  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||   |||||||||||||| ||||||| |||||| ||||||||||||    
T  33119297 tttaattatattgacataattatcctcatattcatttttaaatgacaaaattgtccttattaaaaatttaagtg-tttcaatatattgcttatt 33119205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 116 - 309
Target Start/End: Complemental strand, 47646269 - 47646056
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaa----------- 204  Q
    |||||||||||||||| ||||||||| || |||||||||| | | ||||||||||||||||  | ||||||||||||||||||||||||               
T  47646269 gggtccgtttggttcgggggttttgatggagaggggagggaaggggagggaatattttaaatttcttgtgtttggttcaatttttagaatgggaggggag 47646170  T
Q  205 ---------ggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
             |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||    
T  47646169 ggagaggaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagtttttttggaggggaggggagggaaagataaatgatttaa 47646070  T
Q  296 tgcaattttaatta 309  Q
    ||||||||||||||    
T  47646069 tgcaattttaatta 47646056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 12313174 - 12313269
Alignment:
Q  120 ccgtttggttcgcgggttttga-----aggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||| |||||||||     |||||||||||| ||| | ||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  12313174 ccgtttggttcgggggttttgatggggaggggaggggagaggaggggagggaatattttaaatttgttgtgtttggttcaatttttagaaggggag 12313269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 1828759 - 1828670
Alignment:
Q  111 tctacgggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||| |||||||||||||||| ||||||||| |||||||||          |||||||||||||||  | ||||||||||||||||||||||||||||||    
T  1828759 tctaagggtccgtttggttcgggggttttgatggggagggg----------agggaatattttaaatttattgtgtttggttcaatttttagaaggggag 1828670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 16729970 - 16730061
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggg 207  Q
    |||||||||||||||| | |||||| |||||||||||||| | | ||||| | ||||| || ||   |||||||||||||||||||||||||    
T  16729970 gggtccgtttggttcgagagttttggaggggaggggagggaaggggaggggagatttttaatatgaagtgtttggttcaatttttagaaggg 16730061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 44118418 - 44118467
Alignment:
Q  161 gagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  44118418 gagggaatattttaaatttgttgtgtttggttcaatttttagaaggggag 44118467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 373
Target Start/End: Complemental strand, 40041067 - 40040968
Alignment:
Q  273 ggagggaaagagagatgagttaatgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaa 372  Q
    |||||||| || ||| ||||||||  ||||||||| | ||| ||||||||||||| || |||||||| ||||| ||||| ||||| || |||||||||||    
T  40041067 ggagggaaggatagaagagttaataaaattttaataaaatttacataattatccttatatttattttaaaatgtcaaat-cgtccctactaaaaacttaa 40040969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 47646058 - 47646002
Alignment:
Q  339 ttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| ||||| ||||||    
T  47646058 ttaaatgacaaaatcgtccttattaaaaatttaagtgttttcaatatattacttatt 47646002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 42027270 - 42027303
Alignment:
Q  120 ccgtttggttcgcgggttttgaaggggaggggag 153  Q
    |||||||||| |||||||||||||||||||||||    
T  42027270 ccgtttggtttgcgggttttgaaggggaggggag 42027303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 116 - 395
Target Start/End: Original strand, 16617676 - 16617974
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||         
T  16617676 gggtccgtttggttcgcgggttttgaaggggaggggaggagaagggagggaatgttttaaaaattttgtgtttggttcaatttttagaaggggaggggag 16617775  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16617776 ggagaggaaggggagcaaaatccctcataagctcatttattgctccccatcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaa 16617874  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  16617875 tgcaattttaattatattgacataattatcctcatgtttatttttaaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 16617974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 116 - 395
Target Start/End: Original strand, 30404035 - 30404335
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||          
T  30404035 gggtctgtttggttcgcgggttttgaacgggaggggaggggaagggagggaatattttaaaatttttgtgattagttcaatttttagaaggggatgagag 30404134  T
Q  211 ---------------caaaatccctcata--agctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagtt 293  Q
                   ||||||||||||||  ||||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||| |||||||||||    
T  30404135 ggagaggaaggggaacaaaatccctcatataagctcatttatggctcctcctcaaattgaagt-tttttggaggggaggggagagaaaaagagatgagtt 30404233  T
Q  294 aatgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgctta 393  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  30404234 aatgcaattttaattacattaacataattatcctcatgtttatttttaaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgctta 30404333  T
Q  394 tt 395  Q
    ||    
T  30404334 tt 30404335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 119 - 384
Target Start/End: Original strand, 18672692 - 18672975
Alignment:
Q  119 tccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaag------------- 205  Q
    ||||||||||||||||||||||||||| || ||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||                 
T  18672692 tccgtttggttcgcgggttttgaagggaagtggaaggaaagggagggaatatttttaaaattttgtgtttggttcaatttttagaagaggaggggaggga 18672791  T
Q  206 -------gggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgc 298  Q
           ||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  18672792 gaggaaggggagtaaaatccctcataaactcatttattgctcccc-tcaaattggagt-tttttggaggggagtggagggaaagagatatgagttaatgc 18672889  T
Q  299 aattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaaca 384  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||    
T  18672890 aattttaattatattgacataattatcctcatgtttatttttaaatgataaaaccgtccttattaaaaatttaagtgttttcaaca 18672975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 129 - 395
Target Start/End: Complemental strand, 35384971 - 35384686
Alignment:
Q  129 tcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggagc----------------- 211  Q
    ||||| ||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||                      
T  35384971 tcgcgagttttgaaggggaagggaggggaagggagagaatattttaaaaaatttgtgtttgattcaatttttagaaggggaggggagggagaggaagggg 35384872  T
Q  212 ---aaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaatt 308  Q
       ||||||  |||||||||||||||||||||| |||||||||||||| ||||||||  ||||||| | |||||||||||||||||||||||||||||||    
T  35384871 agtaaaatcattcataagctcatttattgctcctcctcaaattggagt-tttttggaccggaggggggagaaagagagatgagttaatgcaattttaatt 35384773  T
Q  309 acattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  35384772 acattgacataattatcctcctgtttatttttaaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 35384686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 37276698 - 37276506
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||| | |||||||||||||||    
T  37276698 gaaggggagcaaaatccctcataagctcatttattgctcctcctcaaattggagt-tttttggaagagaggggagggaaagataaatgagttaatgcaat 37276600  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||||  | ||||| ||||||| | |||||||||||| ||||||||||||    
T  37276599 tttaattacattgacataattatccttatatttatttataaatgacaaaatcttccttgttaaaaattgaagtgttttcaatatattgcttatt 37276506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 118 - 395
Target Start/End: Original strand, 11725878 - 11726173
Alignment:
Q  118 gtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag------- 210  Q
    |||||||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||  | ||||||||||||||||||||||||||||||           
T  11725878 gtccgtttggttcgggggttttgatggggaggggagggaaggggagggaatattttaaatttgttgtgtttggttcaatttttagaaggggaggggaggg 11725977  T
Q  211 -------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatg 297  Q
                 |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||||    
T  11725978 agaggaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagataaatgatttaatg 11726076  T
Q  298 caattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||| |||||||||||||||||||| || ||| ||||||||||||  |||||||||| |||| ||||||| |||||| ||| ||||||||    
T  11726077 caattttaattatattgacataattatcctcatattcattcttaaatgacaaaatcgtccttatttaaaatttaagtg-tttcaatatactgcttatt 11726173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 119 - 395
Target Start/End: Original strand, 10329037 - 10329327
Alignment:
Q  119 tccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag-------- 210  Q
    ||||||||||||| || |||||| || |||||||||| | | ||||||||||||||||  | |||| |||||||||||||||||||||||||            
T  10329037 tccgtttggttcggggattttgatggagaggggagggaatgggagggaatattttaaatttgttgtatttggttcaatttttagaaggggagggagggga 10329136  T
Q  211 -------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattt 303  Q
           |||||| | | ||||| | ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||| ||||||||||||    
T  10329137 aggggagcaaaattctttataagtttatttattgctccccctcaaattgaagt-tttttggaggggaggggagggaaagataaatgatttaatgcaattt 10329235  T
Q  304 taattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||| |||||||||||||||||||| || ||||| ||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||    
T  10329236 taattatattgacataattatcctcatattcattttaaaatgacaaaatcgtccttattaaaaatttaagtgttttcaatatattgcttatt 10329327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 1752064 - 1751873
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || | ||||||||||    
T  1752064 gaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagataaattatttaatgcaat 1751966  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  |||||||||| |||| ||||||| |||||| ||| ||||||||    
T  1751965 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatcgtccttatttaaaatttaagtg-tttcaatatactgcttatt 1751873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 2956402 - 2956104
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    |||||||||||||||| ||||||||| |||||| |||||| | | ||||||||| ||| ||  | ||||||||||||||||||||||||||||||         
T  2956402 gggtccgtttggttcgggggttttgatggggagaggagggaaggggagggaatactttgaatttgttgtgtttggttcaatttttagaaggggaggggag 2956303  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccc-tcaaattggagtgtttttggaggggaggggagggaaagagagatgagtta 294  Q
                   |||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||| | |||| |||    
T  2956302 ggagaggaaggagagcaaaatcccttataagttcatttattgctccccccttaaattggagt-tttttggaggggagggaagggaaagataaatgattta 2956204  T
Q  295 atgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttat 394  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||| |||  ||||||||||||||| ||||||| |||||| |||||||||||    
T  2956203 atgcaattttaattatattgacataattatcctcatattcatttttaaatgaaaaaatcgtccttattaaaaatttaagtg-tttcaatatattgcttat 2956105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 5911032 - 5911104
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||    
T  5911032 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctacg 5911104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 35417198 - 35417270
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||    
T  35417198 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctacg 35417270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 38486559 - 38486486
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  38486559 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacg 38486486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 5917980 - 5918052
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctacg 116  Q
    ||||||||||||||||||| |||| |||| |||||||||||| |||||||||||| |||||||||||||||||    
T  5917980 ttagatactaaaagtgtacttttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctacg 5918052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 36100143 - 36100210
Alignment:
Q  48 atactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctac 115  Q
    |||||||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||||||||||    
T  36100143 atactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctac 36100210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 6751447 - 6751377
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactcta 114  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||||| |||||||||    
T  6751447 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatataaagactcta 6751377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 1752125 - 1752076
Alignment:
Q  161 gagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  1752125 gagggaatattttaaatttgttgtgtttggttcaatttttagaaggggag 1752076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 37276752 - 37276705
Alignment:
Q  161 gagggaatattttaaaaattttgtgtttggttcaatttttagaagggg 208  Q
    ||||||||||||||||  | |||||||||||||| |||||||||||||    
T  37276752 gagggaatattttaaatttgttgtgtttggttcattttttagaagggg 37276705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 7711768 - 7711711
Alignment:
Q  150 ggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggg 207  Q
    |||||||||| ||||||||||||||||  |   |||||||||||||||||| ||||||    
T  7711768 ggaggggaagggagggaatattttaaatttgacgtgtttggttcaatttttggaaggg 7711711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 15295388 - 15295429
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggagggga 157  Q
    |||||||||||||||| | |||||| ||||||||||||||||    
T  15295388 gggtccgtttggttcgagagttttggaggggaggggagggga 15295429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 33674318 - 33674257
Alignment:
Q  284 gagatgagttaatgcaattttaattacattgacataattatcctcatgtttatttttaaatg 345  Q
    ||||||||||| | || | |||||||| |||||| ||||| ||||||||||||||| |||||    
T  33674318 gagatgagttattacagtattaattactttgacaaaattaccctcatgtttattttaaaatg 33674257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 41194005 - 41194081
Alignment:
Q  38 ataaatttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactcta 114  Q
    |||||||| |||| ||||||||| | |||| |||| ||||| |||||| |||||||||| |||||| |||||||||||    
T  41194005 ataaattt-gatattaaaagtgtgcatttgtatcaattcttaaagcatgaaaaattctttaaagatgtgaagactcta 41194081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 10356479 - 10356181
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||         
T  10356479 gggtccgtttgattcgcgggttttaaaggggaggggaggggaagggagggaatattttaaaaaatttgtgtttggttcaatttttagaaggggaggggag 10356380  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10356379 ggagaggaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaa 10356281  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  10356280 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgaaaaatccgtccttattaaaaatttaagtgttttcaacatatttcttatt 10356181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 28809537 - 28809236
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggagggga-----agagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  28809537 gggtccgtttggttcgcgggttttgaaggggaggggaggggaggggaagggagggaatattttaaaaatt--gtgtttggttcaatttttagaaggggag 28809440  T
Q  211 --------------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatga 290  Q
                        |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28809439 gggagggagaggaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagagagatga 28809341  T
Q  291 gttaatgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgc 390  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  28809340 gttaatgcaattttaattacattgacataattatccacatgtttatttttaaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgc 28809241  T
Q  391 ttatt 395  Q
    |||||    
T  28809240 ttatt 28809236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 116 - 395
Target Start/End: Original strand, 35733863 - 35734156
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||     ||||||||||||||| ||||||||||||||||||||||||||||||||         
T  35733863 gggtccgtttggttcgcgggttttgaaggggaggggaaggga-----gggaatattttaaaatttttgtgtttggttcaatttttagaaggggaggggag 35733957  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  35733958 gtagaggaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagt-tttttggaggggaggagagggaaagagagatgagttaa 35734056  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  35734057 tgcaattttaattacattgacataattatcttcatgtttattttttaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 35734156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 202 - 391
Target Start/End: Original strand, 7758615 - 7758803
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7758615 gaaggggagtaaaatccctcataagctcatttattgctctccctcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaatgcaat 7758713  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgct 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  7758714 tttaattacattgacataattatcctcatgtttatttttaaatgacaaaaccatccttattaaaaatttaagtgttttcaacatattgct 7758803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 117 - 395
Target Start/End: Complemental strand, 16257017 - 16256719
Alignment:
Q  117 ggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaagggga------- 209  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||           
T  16257017 ggtctgtttggctcgcgggttttgaaggggaggggaggggaagggagggaatattttaaaaaatttgtgtttggttcaatttttagaaggggatgggagg 16256918  T
Q  210 -------------gcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaat 296  Q
                 ||||||||||| ||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||  |||||    
T  16256917 gagaggaaggggagcaaaatcccttataatttcatttattgctccccctcaaattggagtttttttggaggggaggggagggaaagataaatggtttaat 16256818  T
Q  297 gcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    | ||||||||||| |||||||||||||||||||  || ||||||||||||||||   |||||||||||||| |||||||||||||| ||||||||||||    
T  16256817 gaaattttaattatattgacataattatcctcacattcatttttaaatgacaaaattgtccttattaaaaatttaagtgttttcaatatattgcttatt 16256719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 223 - 385
Target Start/End: Complemental strand, 16256070 - 16255910
Alignment:
Q  223 taagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacattgacataatt 322  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |    
T  16256070 taagctcatttattgctccccctcaaattggagt-tttttggaggggaggg-atggaaagagagatgagttaatgcaattttaattacattgacataagt 16255973  T
Q  323 atcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacat 385  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||    
T  16255972 atcctcatgtttatttttaaataacaaaaccgtccttattaaaaatttaagtgttttcaacat 16255910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 43589242 - 43589434
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    |||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||||||||    
T  43589242 gaaggggagcaaaatcacttataagttcaattattgctccccctcaaattggagt-tttttggaggggaggggagggaaagataaatgatttaatgcaat 43589340  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||    
T  43589341 tttaattatattgacataattatcctcatattcctttttaaatgacaaaatcgtccttattaaaaatttaagtgttttcaatatattgcttatt 43589434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 259 - 395
Target Start/End: Original strand, 34209835 - 34209971
Alignment:
Q  259 ttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtcct 358  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||  ||||||    
T  34209835 ttttggaggggaggggagggaaagataaatgagttaatgcaattttaattacgttgacataattatcctcatatttatttttaaataacaaaatcgtcct 34209934  T
Q  359 tattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  34209935 tattaaaaatttaagtgttttcaatatattgcttatt 34209971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 20471681 - 20471603
Alignment:
Q  38 ataaatttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctacg 116  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||    
T  20471681 ataaatttagatattaaaagtgtacctttgtatcaattcttgaagcataaaaattcattaaagatatgaagactctacg 20471603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 7758540 - 7758603
Alignment:
Q  147 aggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  7758540 aggggaggggaagggagggaatattttaaaaaatttgtgtttagttcaatttttagaaggggag 7758603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 43589136 - 43589230
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||||||| ||||||||| ||||| | ||||| | | ||||||||||||||||  | |||||||||||| |||||||||||||||||    
T  43589136 gggtccgtttggttcgggggttttgatggggatgagagggaaggggagggaatattttaaatttgttgtgtttggtttaatttttagaaggggag 43589230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 39576466 - 39576560
Alignment:
Q  184 tgtttggttcaatttttagaaggggagc-----aaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggg 273  Q
    ||||||||||||||||||||||||||||     |||| ||||| ||||||||||||||||| ||||  |||||||||| ||||||| ||||||||    
T  39576466 tgtttggttcaatttttagaaggggagcggagcaaaacccctcttaagctcatttattgcttcccccgaaattggagtttttttggtggggaggg 39576560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 31916914 - 31916978
Alignment:
Q  143 ggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggg 207  Q
    ||||||||||||||| | ||||||||||||||||| || | |||||||||||||||||| |||||    
T  31916914 ggggaggggaggggaggggagggaatattttaaaatttatttgtttggttcaatttttaaaaggg 31916978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 34209706 - 34209790
Alignment:
Q  120 ccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||| ||||||||| ||||||||||||| |     ||||||||||||||  | |||||||||||||||||||||||| |||||    
T  34209706 ccgtttggttcg-gggttttgatggggaggggagggaa-----gggaatattttaaatttgttgtgtttggttcaatttttagaatgggag 34209790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 31916995 - 31917070
Alignment:
Q  204 aggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaa 280  Q
    |||| |||||||||||| ||| |||||||||||||| ||| |||||||||||| ||||| | ||| |||||||||||    
T  31916995 agggaagcaaaatcccttatatgctcatttattgcttcccatcaaattggagt-ttttttgtgggaaggggagggaa 31917070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 43582594 - 43582686
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||| ||| |||||||| |||||||||||||||| | || | |  |||||  || |||||||||||||||||  |||||||||||||    
T  43582594 gggtccgtttggatcgggggttttggaggggaggggaggggaggggatgtagcatttt--aatttttgtgtttggttcaaactttagaaggggag 43582686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 35861020 - 35860912
Alignment:
Q  264 gaggggaggggagggaaagagagatgagttaatgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttatta 363  Q
    ||||||| || |||||| ||||||||| ||||| || ||||||||| ||| ||||||| ||||  || |||||||| || || ||||   ||||||||||    
T  35861020 gaggggaaggaagggaaggagagatgatttaatacagttttaattatattaacataataatccctatatttattttaaattgtcaaaattgtccttatta 35860921  T
Q  364 aaaacttaa 372  Q
    |||| ||||    
T  35860920 aaaatttaa 35860912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 26275582 - 26275494
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaagggga 209  Q
    ||||| |||||||||| | |||||| ||||||||||||||||     | ||||||||| ||  |   |||||||||||||||||||||||||||    
T  26275582 gggtctgtttggttcgagagttttggaggggaggggagggga-----gagaatatttttaatttgaagtgtttggttcaatttttagaagggga 26275494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 34041926 - 34041881
Alignment:
Q  165 gaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    ||||||||||||  |  |||||||||||||||||||||||||||||    
T  34041926 gaatattttaaatttgatgtgtttggttcaatttttagaaggggag 34041881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 116 - 395
Target Start/End: Original strand, 51621131 - 51621428
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||         
T  51621131 gggttcgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaatttttgtgtttggttcaatttttagaaggggaggggag 51621230  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51621231 agagaggaaggggaacgaaatccctcataagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaa 51621329  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  51621330 tgcaattttaattacattgacataat-atcctcatgtttatttttaaatgaaaaatccgtccttattaaaaatttaagtgttttcaacatattgcttatt 51621428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 118 - 395
Target Start/End: Complemental strand, 46834006 - 46833719
Alignment:
Q  118 gtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggagc------ 211  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||           
T  46834006 gtccgtttggttcgtgggttttgaagggaaggggaggggaagggagggaatattttaaattttttgtgtttggttcaatttttagaaggggaggggaggg 46833907  T
Q  212 -----aaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaa 306  Q
         ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46833906 ggaggaaaatccatcataagctcatttattcctccccctcaaattggagt-tttttggaggggaggggagggaaagagagataagttaatgcaattttaa 46833808  T
Q  307 ttacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||    
T  46833807 ttacattgacacaattatcctcatgtttatttttaaatgacaaaattgtccttattaaaaatttaagtgttttcaacatattgcttatt 46833719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 116 - 392
Target Start/End: Complemental strand, 15545330 - 15545035
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||         
T  15545330 gggtccgtttggttcgtgggttttgaaggggaggggaggggatgggagggaatattttaaaaattttgtgtttggttcaatttttagaaggggaggggag 15545231  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  15545230 ggagaggaaggggagcaaaatccctcataagctcatttattactccccctcaaattggagt-tttttgcaggggaggggagggaaagggagatgagttaa 15545132  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgctt 392  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  15545131 ttcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaaaccgaccttattaaaaatttaagtgttttcaacatattgctt 15545035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 150 - 395
Target Start/End: Original strand, 261031 - 261290
Alignment:
Q  150 ggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag---------------caaaatccctcataagctcattta 234  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||               ||||||||||||||||||||||||    
T  261031 ggaggggaagggagggaatattttaaaaattttgtgtttgtttcaatttttagaaggggagggagaggaaagggagcaaaatccctcataagctcattta 261130  T
Q  235 ttgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacattgacataattatcctcatgttt 334  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  261131 ttgttccccctcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacattgacataattatcctcatgttt 261229  T
Q  335 atttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  261230 atttttaaatgactaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 261290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 2326201 - 2326393
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2326201 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagagagatgagttaatgcaat 2326299  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  2326300 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaatttaagtgttttcaacatattacttatt 2326393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 29744257 - 29743963
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatat--tttaaaaattttgtgtttggttcaatttttagaaggggag--- 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||     ||||||||  ||||||||||||||||||| ||||||||||||||||||||       
T  29744257 gggtccgtttggttcgcgggttttgaaggggaggggaaggga-----gggaatatattttaaaaattttgtgtttgcttcaatttttagaaggggagggg 29744163  T
Q  211 -----------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagtt 293  Q
                     ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29744162 agggagaggaaggggagcaaaatccctcataagctcatttattgctcccc-tcaaattggagt-tttttggaggggaggggagggaaagagagatgagtt 29744065  T
Q  294 aatgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgctta 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29744064 aatgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatctgtccttattaaaaacttaagtgttttcaacatattgctta 29743965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 44565877 - 44565579
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    |||||||||||||| | ||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||         
T  44565877 gggtccgtttggtttgtgggttttgaaggggagatgaggggaagggagggaatattttaaaatttttgtgtttggttcaatttttagaaggggaggggag 44565778  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   ||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  44565777 ggagaggaaggggagcaaaatccctcataaactcttttattgctccccctcaaattggatt-tttttggaggggaggggagggaaagagagatgagttaa 44565679  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  44565678 tgcaattttaattacattgatataattatcctcatgtttatttttaaatgacaaaaccatccttattaaaaatttaagtgttttcaacatattgcttatt 44565579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 122 - 395
Target Start/End: Complemental strand, 42887466 - 42887179
Alignment:
Q  122 gtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----------- 210  Q
    |||||||||| |||||||||||||||||||| ||||     |||||||||||||||| |||||||||||||||||||||||||||||||               
T  42887466 gtttggttcgtgggttttgaaggggaggggaaggga-----gggaatattttaaaaaatttgtgtttggttcaatttttagaaggggagaggagggagag 42887372  T
Q  211 ---------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
             |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42887371 gaaggggagcaaaatccctcataagctcatttattgctcccactcaaatttgagt-tttttggaggggaggggagggaaagagagatgagttaatgcaat 42887273  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42887272 tttaattacattgacataattatcctcatgtttatttttaaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 42887179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 49622268 - 49622457
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||    
T  49622268 gaaggggagcaaaatccctcgtaagctcatttattgctccccctcaaattggagt-tttttggaggggaggggagg-aaagagagatgatttaatgcaat 49622365  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  49622366 tttaattacattgaca--attatcctcatgtttatttttaaatgacaaaaccgttcttattaaaaatttaagtgttttcaacatattgcttatt 49622457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 33506426 - 33506234
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  33506426 gaaggggagcaaaatccctcaaaagctcatttattactctccctcaaattggagt-tttttggaggggaggggagggaaagataaatgagttaatgcaat 33506328  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||| |||||  ||||||||||||||| |||||||||||||| ||||||||||||    
T  33506327 tttaattacgttgacgtaattatcctcatatttatttttaaataacaaaatcgtccttattaaaaatttaagtgttttcaatatattgcttatt 33506234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 21373341 - 21373532
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||||||||    
T  21373341 gaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagataaatgatttaatgcaat 21373439  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  | ||||||||||||| ||||||| |||||| ||||||||||||    
T  21373440 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatcatccttattaaaaatttaagtg-tttcaatatattgcttatt 21373532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 202 - 392
Target Start/End: Original strand, 17306965 - 17307155
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||| |||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||| | ||||||||| | ||||| |||||||    
T  17306965 gaaggtgagcaaaatccctcgtaagcttatttattgcttcccctcaaattggagtttttttggaggggagggaaaggaaagagatacgagttgatgcaat 17307064  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgctt 392  Q
    ||||||||||||||||||||||||||||  ||||||||||||| | |||  ||||||||||||||| ||||||||||||| ||||||||||    
T  17307065 tttaattacattgacataattatcctcaaatttatttttaaataataaaatcgtccttattaaaaatttaagtgttttcagcatattgctt 17307155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 37661336 - 37661526
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||  ||||||||| | |||| ||||||||||    
T  37661336 gaaggggagcaaaatcccttataagttcatttattgctccccctcaaatttgagt-tttttggaggggagga-agggaaagataaatgatttaatgcaat 37661433  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  ||||||||||||||| ||||||| |||||| ||||||||||||    
T  37661434 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatcgtccttattaaaaatttaagtg-tttcaatatattgcttatt 37661526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 271
Target Start/End: Complemental strand, 11385675 - 11385502
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaag---------- 205  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||              
T  11385675 gggtccgtttgattcgcgggttttgaaggggagaggaggggaagggagggaatattttaaaatttttgtgtttggttcaaattttagaaggggatgggag 11385576  T
Q  206 ----------gggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggag 271  Q
              |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  11385575 ggagaggaaggggagcaaaatccctcataagctcatttattgct-cccctcaaattggagt-tttttggaggggag 11385502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 16860257 - 16860330
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  16860257 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacg 16860330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 19406204 - 19406131
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  19406204 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacg 19406131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 341027 - 341115
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||| |||||||||||||||||||||||||||||||| ||      |||||||||||||||| |||||| |||||||||||||||| ||||||||    
T  341027 gggtacgtttggttcgcgggttttgaaggggaggggaagg------agggaatattttaaaatttttgtatttggttcaatttttaaaaggggag 341115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 40772498 - 40772425
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| | ||||||||||||||| |||||||||||||    
T  40772498 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgagaaattcttcaaagatgtgaagactctacg 40772425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 341122 - 341167
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctca 247  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  341122 gaaggggagcaaaatccttcataagctcatttattgctccctctca 341167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 2326131 - 2326180
Alignment:
Q  152 aggggaagagagggaatattttaaaaattttgtgtttggttcaattttta 201  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  2326131 aggggaagggagagaatattttaaaaatgttgtgtttggttcaattttta 2326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 33506532 - 33506447
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaattttta 201  Q
    ||||||||||| |||| ||||||||| ||||||||| || || |  ||| |||||||||||  | |||||||||||||||||||||    
T  33506532 gggtccgtttgattcgggggttttgatggggaggggtggcgagggaaggcaatattttaaatttgttgtgtttggttcaattttta 33506447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 5154302 - 5154344
Alignment:
Q  228 tcatttattgctccccctcaaattggagtgtttttggaggggag 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  5154302 tcatttattgctccccctcaaattggagt-tttttggaggggag 5154344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 27867419 - 27867465
Alignment:
Q  282 gagagatgagttaatgcaattttaattacattgacataattatcctc 328  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||    
T  27867419 gagagataagttactacaattttaattacattgacataattatcctc 27867465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 5153542 - 5153622
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaattttta 201  Q
    ||||||||||||||| ||||||||||      |||||||||||| |||| || |||||||   |||||||||||||||||||||||    
T  5153542 gggtccgtttggttcacgggttttga-----tggggaggggaagggaggaaacattttaatttttttgtgtttggttcaattttta 5153622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 15431179 - 15431110
Alignment:
Q  270 aggggagggaaagagagatgagttaatgcaattttaattacattgacataattatcctcatgtttatttt 339  Q
    ||||||||| | ||||||  ||||||| |||||||||||| |||||||||||||| ||||  ||||||||    
T  15431179 aggggaggggaggagagactagttaatacaattttaattatattgacataattattctcacatttatttt 15431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 50376884 - 50376752
Alignment:
Q  154 gggaagagagggaatattttaaaaattttgtgtttggttcaatttttaga-------aggggagcaaaatccctcataagctcatttattgctccccctc 246  Q
    |||||| ||||| ||||||||||| || | |||||||||||||||| ||        |||| || ||||||||| ||| |||||||||||||| ||| |     
T  50376884 gggaagggaggggatattttaaaatttatttgtttggttcaattttgagggatggggagggaagaaaaatcccttatatgctcatttattgcttcccatt 50376785  T
Q  247 aaattggagtgtttttggaggggaggggagggaa 280  Q
    |||||||||| ||||| | ||| |||||||||||    
T  50376784 aaattggagt-ttttttgtgggaaggggagggaa 50376752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 49622177 - 49622215
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggagg 154  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  49622177 gggtccgtttggttcgcgggttttgaagggaaagggagg 49622215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 122 - 395
Target Start/End: Complemental strand, 419 - 132
Alignment:
Q  122 gtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----------- 210  Q
    |||||||||| |||||||||||||||||||| ||||     |||||||||||||||| |||||||||||||||||||||||||||||||               
T  419 gtttggttcgtgggttttgaaggggaggggaaggga-----gggaatattttaaaaaatttgtgtttggttcaatttttagaaggggagaggagggagag 325  T
Q  211 ---------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
             |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  324 gaaggggagcaaaatccctcataagctcatttattgctcccactcaaatttgagt-tttttggaggggaggggagggaaagagagatgagttaatgcaat 226  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  225 tttaattacattgacataattatcctcatgtttatttttaaatgacaaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 43634478 - 43634181
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag----- 210  Q
    ||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||| ||||||| ||||||||||||||||||||||||         
T  43634478 gggtccgtttggttcgcggattttgaaggggaggggaggggaatggagggaatattttcaaatttttgtgcttggttcaatttttagaaggggagggaag 43634379  T
Q  211 ---------------caaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaa 295  Q
                   ||||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  43634378 ggagaggaaggggagcaaaatctctcataagttcatttattgctccccctcaaattgaagt-tttttggaggggaggggagggacagagagatgagttaa 43634280  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||    
T  43634279 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaaaccgtccttattaaaaa-ttaggtgttttcaatatattgcttatt 43634181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 2956703 - 2956511
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||||||||    
T  2956703 gaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagt-tttttggaggggaggggagggaaagataaatgatttaatgcaat 2956605  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||    
T  2956604 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatcgtccttattaaaaatttaagtgttttcaatatattgcttatt 2956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 36557804 - 36557612
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||| ||||||||||    
T  36557804 gaaggggagcaaaatcccttataagttcatttattgctccccttcaaattggagt-tttttggaggggaggggagggaaagataaatgatttaatgcaat 36557706  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  ||| ||||||||||| ||||||||||| || ||||||||||||    
T  36557705 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatcgttcttattaaaaatttaagtgtttttaatatattgcttatt 36557612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 40978306 - 40978115
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| | |||||||||||||||    
T  40978306 gaaggtgagcaaaattcctcaaaagctcatttattgctccccctcaaattagagt-tttttggaggggaggggatggaaagataaatgagttaatgcaat 40978208  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    ||||||||| |||||||||||||| |||| ||||||||||||| |||||  ||||||||||||||| || ||||||||||| ||||||||||||    
T  40978207 tttaattacgttgacataattatcttcatatttatttttaaataacaaaatcgtccttattaaaaa-tttagtgttttcaatatattgcttatt 40978115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 43048645 - 43048454
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||||| | | ||||| | |||| ||||||||||    
T  43048645 gaaggggagtaaaatcccttataagttcatttattgctccccctcaaattggagtttttttggagaggagggaaag-aaagataaatgatttaatgcaat 43048547  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||| ||||| || ||||||||||||||||   |||||||||||||| ||||||| |||||| ||||||||||||    
T  43048546 tttaattatattgacataattattctcatattcatttttaaatgacaaaattgtccttattaaaaatttaagtg-tttcaatatattgcttatt 43048454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 202 - 387
Target Start/End: Original strand, 21594602 - 21594792
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttg------gaggggaggggagggaaagagagatgagttaa 295  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||      | |||| |||| ||| |||| | |||||||||    
T  21594602 gaaggggagcaaaatccctcgtaagctcatttattgctccccctcaaattggag-gtttttgagggggggggggggggggggggaagataaatgagttaa 21594700  T
Q  296 tgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatat 387  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||  |  ||||||| |||| |||||||||||||| ||||    
T  21594701 tgcaattttaattacattgacataattattctcatatttatttttaaatgacaaaatcaaccttatttaaaatttaagtgttttcaatatat 21594792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 305 - 395
Target Start/End: Original strand, 6610253 - 6610343
Alignment:
Q  305 aattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||    
T  6610253 aattacattgacataattatcctcatgtttatttttaaatgataaaaccgtccttattaaaaatttaagtgttttcaacatattgcttatt 6610343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 6602401 - 6602501
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccc-tcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaa 300  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  6602401 gaaggggagcaaaatccctcataagttcatttattgctcctccgtcaaattgaagt-tttttggaggggaggggaggaaaagaaagatgagttaatgcaa 6602499  T
Q  301 tt 302  Q
    ||    
T  6602500 tt 6602501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 6677854 - 6677954
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccc-tcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaa 300  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  6677854 gaaggggagcaaaatccctcataagttcatttattgctcctccgtcaaattgaagt-tttttggaggggaggggaggaaaagaaagatgagttaatgcaa 6677952  T
Q  301 tt 302  Q
    ||    
T  6677953 tt 6677954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 6602304 - 6602389
Alignment:
Q  115 cgggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||||||||| ||||||||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||    
T  6602304 cgggtccgtttggttcgcaggttttgaaggggaggggaggaga----------tattttaaaaattttgtgtttggttcaatttttagaaggggag 6602389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 6677757 - 6677842
Alignment:
Q  115 cgggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||||||||| ||||||||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||    
T  6677757 cgggtccgtttggttcgcaggttttgaaggggaggggaggaga----------tattttaaaaattttgtgtttggttcaatttttagaaggggag 6677842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 21593563 - 21593489
Alignment:
Q  38 ataaatttagatactaaaagtgtacctttgcatcagttcttgaagcata-aaaattcttcaaagatatgaagact 111  Q
    ||||||||||||||||||||||||||| |  |||| ||||||||||||| |||||||||||||||||||||||||    
T  21593563 ataaatttagatactaaaagtgtacctctatatcaattcttgaagcataaaaaattcttcaaagatatgaagact 21593489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 40978409 - 40978319
Alignment:
Q  119 tccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaagggga 209  Q
    ||||||||||||| ||||||||| ||||||||||||||| |  ||  |||||||||||  | |||||||||||| ||||||||||||||||    
T  40978409 tccgtttggttcgggggttttgatggggaggggaggggagggaagaaaatattttaaatttgttgtgtttggtttaatttttagaagggga 40978319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 43048746 - 43048657
Alignment:
Q  121 cgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    ||||||||||| ||||||||| || ||||||||   | | ||||||||||||||||  | ||||||||| ||||||||||||||||||||    
T  43048746 cgtttggttcgggggttttgatggtgaggggagaaaaggggagggaatattttaaatttgttgtgtttgattcaatttttagaaggggag 43048657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 2956799 - 2956715
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    |||||||||||||||| ||||||||| |||||||||          |||||||||||||||  | ||||||||||||||||||||||||||||||    
T  2956799 gggtccgtttggttcgggggttttgatggggagggg----------agggaatattttaaatttcttgtgtttggttcaatttttagaaggggag 2956715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 36557866 - 36557819
Alignment:
Q  161 gagggaatattttaaaaattttgtgtttggttcaatttttagaagggg 208  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||    
T  36557866 gagggaatattttaaatttcttgtgtttggttcaatttttagaagggg 36557819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 20219741 - 20219548
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccc-tcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaa 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||    
T  20219741 gaaggggagcaaaatccctcagaagctcatttattgctcccccctcaaattggagt-tttctagaggggaggggagggaaagaaagatgagttaatgcaa 20219643  T
Q  301 ttttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||| ||||||| |||||||||| ||||||||    
T  20219642 ttttaattacattgacataattatcctcatatttatttttaaatgacaaaatcgtccttattaaaaatttaagtgctttcaacatactgcttatt 20219548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 22113766 - 22113573
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccc-tcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaa 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||    
T  22113766 gaaggggagcaaaatccctcagaagctcatttattgctcccccctcaaattggagt-tttctagaggggaggggagggaaagaaagatgagttaatgcaa 22113668  T
Q  301 ttttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||| ||||||| |||||||||| ||||||||    
T  22113667 ttttaattacattgacataattatcctcatatttatttttaaatgacaaaatcgtccttattaaaaatttaagtgctttcaacatactgcttatt 22113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 202 - 395
Target Start/End: Complemental strand, 11455880 - 11455688
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||| ||||||||||    
T  11455880 gaaggggagcaaaatctcttataagttcatttattgctccccctcaaattggagt-tttttggaggggaggggaggaaaagataaatgatttaatgcaat 11455782  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  ||||||||||||||| ||||||||| |||| ||||||||||||    
T  11455781 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatcgtccttattaaaaatttaagtgttgtcaatatattgcttatt 11455688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 20219842 - 20219759
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaa 204  Q
    ||||||||||||||||||||||||||||||||| ||| ||     ||||| ||||||||||  ||||||| ||||||||||||||||||    
T  20219842 gggtccgtttggttcgcgggttttgaaggggagaggatgg-----gaggggatattttaaattttttgtgcttggttcaatttttagaa 20219759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 22113867 - 22113784
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggggaagagagggaatattttaaaaattttgtgtttggttcaatttttagaa 204  Q
    ||||||||||||||||||||||||||||||||| ||| ||     ||||| ||||||||||  ||||||| ||||||||||||||||||    
T  22113867 gggtccgtttggttcgcgggttttgaaggggagaggatgg-----gaggggatattttaaattttttgtgcttggttcaatttttagaa 22113784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 11455941 - 11455892
Alignment:
Q  161 gagggaatattttaaaaattttgtgtttggttcaatttttagaaggggag 210  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  11455941 gagggaatattttaaatttgttgtgtttggttcaatttttagaaggggag 11455892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 10838799 - 10838840
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggagggga 157  Q
    |||||||||||||||| | |||||| ||||||||||||||||    
T  10838799 gggtccgtttggttcgagagttttggaggggaggggagggga 10838840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 46484885 - 46485076
Alignment:
Q  202 gaaggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaat 301  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| | |||| ||||||||||    
T  46484885 gaaggggagcaaaatcccttataagttcatttattgctccccctcaaattggagt-tttttggagaggagtggagggaaagataaatgatttaatgcaat 46484983  T
Q  302 tttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||  | ||||||||||||| |||||||||||||| ||||||||||||    
T  46484984 tttaattatattgacataattatcctcatattcatttttaaatgacaaaatc-tccttattaaaaatttaagtgttttcaatatattgcttatt 46485076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 10567720 - 10567648
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||    
T  10567720 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctacg 10567648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 10570970 - 10570898
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcataaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||    
T  10570970 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctacg 10570898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 29672670 - 29672743
Alignment:
Q  44 ttagatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||||||||||||||||||||| |||| |||||||||||| || |||||||||| |||||||||||||||||    
T  29672670 ttagatactaaaagtgtacctttgtatcaattcttgaagcatgaagaattcttcaatgatatgaagactctacg 29672743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 20283923 - 20283852
Alignment:
Q  46 agatactaaaagtgtacctttgcatcagttcttgaagcat-aaaaattcttcaaagatatgaagactctacg 116  Q
    |||||| | ||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  20283923 agatacaagaagtgtacctttgtatcaattcttgaagcatgaaaaattcttcaatgatatgaagactctacg 20283852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 26103549 - 26103614
Alignment:
Q  247 aaattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacatt 313  Q
    |||||||||| ||||||| ||||||| ||| ||||||| |  |||||||||||||||||||||||||    
T  26103549 aaattggagt-tttttggtggggaggagagagaaagaggggagagttaatgcaattttaattacatt 26103614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 46484789 - 46484828
Alignment:
Q  116 gggtccgtttggttcgcgggttttgaaggggaggggaggg 155  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  46484789 gggtccgtttggttcgggggttttgatggggaggggaggg 46484828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 104880 - 104822
Alignment:
Q  204 aggggagcaaaatccctcataagctcatttattgctccccctcaaattggagtgttttt 262  Q
    |||||||||||||  ||||||  ||||||||||| | |||||||||||||||| |||||    
T  104880 aggggagcaaaatttctcatagactcatttattgtttcccctcaaattggagtattttt 104822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 373
Target Start/End: Original strand, 29085435 - 29085520
Alignment:
Q  287 atgagttaatgcaattttaattacattgacataattatcctcatgtttatttttaaatgacaaatccgtccttattaaaaacttaag 373  Q
    |||||||||| |||||||||||||||  |||| ||||||||| | |||||||| ||||| ||||   ||||||| |||||| |||||    
T  29085435 atgagttaatacaattttaattacatgaacat-attatcctcgtatttattttaaaatgccaaaattgtccttactaaaaatttaag 29085520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 55079047 - 55079014
Alignment:
Q  177 aattttgtgtttggttcaatttttagaaggggag 210  Q
    |||| |||||||||||||||||||||||||||||    
T  55079047 aattatgtgtttggttcaatttttagaaggggag 55079014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 42168148 - 42168184
Alignment:
Q  117 ggtccgtttggttcgcgggttttgaaggggaggggag 153  Q
    ||||||||||||||| | |||||||||||||||||||    
T  42168148 ggtccgtttggttcgagagttttgaaggggaggggag 42168184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 248 - 395
Target Start/End: Complemental strand, 258 - 112
Alignment:
Q  248 aattggagtgtttttggaggggaggggagggaaagagagatgagttaatgcaattttaattacattgacataattatcctcatgtttatttttaaatgac 347  Q
    ||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  258 aattggagt-tttttggaggggaggggagggaaagataaatgatttaatgcaattttaattatattgacataattatcctcatattcatttttaaatgac 160  T
Q  348 aaatccgtccttattaaaaacttaagtgttttcaacatattgcttatt 395  Q
    |||  ||||||||||||||| ||||||||||| || ||||||||||||    
T  159 aaaatcgtccttattaaaaatttaagtgtttttaatatattgcttatt 112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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