View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_low_8 (Length: 403)
Name: NF11167_low_8
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_low_8 |
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| [»] scaffold0041 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 96237 - 96639
Alignment:
| Q |
1 |
ttgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96237 |
ttgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattgg |
96336 |
T |
|
| Q |
101 |
aatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgct |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96337 |
aatcacacttcagattaggtggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgct |
96436 |
T |
|
| Q |
201 |
tctgttcaggctgctgatccgtcatggcctgattctctgtggagacttctccaggtatagacacgtgtattacatactccctctggacttaatttgcacg |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96437 |
tctgtgcaggctgctgatccgtcatggcctgattctctgtggagacttctccaggtatagacacgtgtattacatactccctctggacttaatttgcacg |
96536 |
T |
|
| Q |
301 |
agaacttgttttattgatgaatgattggagaataataacattaaatacggcaaagttagttatattttggtcaatactgtcaaatagcggctatagtggc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
96537 |
agaacttgttttattgatgaatgattggagaataataacattaaatacggcaaagttagttatatttttgtcaatactgtcaaatagcggctatagtggc |
96636 |
T |
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| Q |
401 |
gct |
403 |
Q |
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| T |
96637 |
gct |
96639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 88229 - 88596
Alignment:
| Q |
1 |
ttgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88229 |
ttgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattgg |
88328 |
T |
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| Q |
101 |
aatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88329 |
aatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgct |
88428 |
T |
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| Q |
201 |
tctgttcaggctgctgatccgtcatggcctgattctctgtggagacttctccaggtatagacacgtgtattacatactccctctggacttaatttgcacg |
300 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||| || |||||| || | |
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| T |
88429 |
tctgttcaggctgctgatccgtcatggtctgattctatgtggagacttctcgaggtatagacatgtttattatatactccctctagaactaatttacatg |
88528 |
T |
|
| Q |
301 |
agaacttgttttattgatgaatgattggagaataataacattaaatacggcaaagttagttatatttt |
368 |
Q |
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||| ||||||||||||||||||| || |||||||||| | ||||||||| |||||||||| ||||| |
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| T |
88529 |
agagcttgttttattgatgaatgttttgagaataatagcggtaaatacggtgaagttagttagatttt |
88596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 40870045 - 40869643
Alignment:
| Q |
1 |
ttgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870045 |
ttgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattgg |
40869946 |
T |
|
| Q |
101 |
aatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgct |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869945 |
aatcacacttcagattaggtggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgct |
40869846 |
T |
|
| Q |
201 |
tctgttcaggctgctgatccgtcatggcctgattctctgtggagacttctccaggtatagacacgtgtattacatactccctctggacttaatttgcacg |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869845 |
tctgtgcaggctgctgatccgtcatggcctgattctctgtggagacttctccaggtatagacacgtgtattacatactccctctggacttaatttgcacg |
40869746 |
T |
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| Q |
301 |
agaacttgttttattgatgaatgattggagaataataacattaaatacggcaaagttagttatattttggtcaatactgtcaaatagcggctatagtggc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40869745 |
agaacttgttttattgatgaatgattggagaataataacattaaatacggcaaagttagttatatttttgtcaatactgtcaaatagcggctatagtggc |
40869646 |
T |
|
| Q |
401 |
gct |
403 |
Q |
| |
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||| |
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| T |
40869645 |
gct |
40869643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 40878054 - 40877687
Alignment:
| Q |
1 |
ttgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattttcctcggtcgggtactcctgagttttttgtgaaaacttctttaattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878054 |
ttgaagcagtaagactcggtactaatatgcagccgtttgatgtggtttattatcctcggtcgggtactcctgagttttttgtgaaaacttctttaattgg |
40877955 |
T |
|
| Q |
101 |
aatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877954 |
aatggcacttcagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgct |
40877855 |
T |
|
| Q |
201 |
tctgttcaggctgctgatccgtcatggcctgattctctgtggagacttctccaggtatagacacgtgtattacatactccctctggacttaatttgcacg |
300 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||| || |||||| || | |
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| T |
40877854 |
tctgttcaggctgctgatccgtcatggtctgattctatgtggagacttctcgaggtatagacatgtttattatatactccctctagaactaatttacatg |
40877755 |
T |
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| Q |
301 |
agaacttgttttattgatgaatgattggagaataataacattaaatacggcaaagttagttatatttt |
368 |
Q |
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||| ||||||||||||||||||| || |||||||||| | ||||||||| |||||||||| ||||| |
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| T |
40877754 |
agagcttgttttattgatgaatgttttgagaataatagcggtaaatacggtgaagttagttagatttt |
40877687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 21716267 - 21716367
Alignment:
| Q |
120 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgatc |
219 |
Q |
| |
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|||||| |||| ||||||||||||||| || ||||||| || ||||| || ||||| ||||||||||| ||||| | ||||||||||||| || ||||| |
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| T |
21716267 |
tggtgttctgggatgaggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttctgttcaggttgttgatc |
21716366 |
T |
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| Q |
220 |
c |
220 |
Q |
| |
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| |
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| T |
21716367 |
c |
21716367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 1726018 - 1725978
Alignment:
| Q |
331 |
aataataacattaaatacggcaaagttagttatattttggt |
371 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||||| |
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| T |
1726018 |
aataataacattaaatagagcaaagttaattatattttggt |
1725978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 28347335 - 28347416
Alignment:
| Q |
111 |
cagattaggtggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaa |
192 |
Q |
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|||||| | |||||| ||||||| || |||||||||||| ||||||||||||| || || | |||||||||||||| |||| |
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| T |
28347335 |
cagattcgatggtgttctggaataagattcaagatggcctttgaaaccgaggattcgtctcgaataagttggtttatgggaa |
28347416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 42730737 - 42730825
Alignment:
| Q |
120 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttca |
208 |
Q |
| |
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|||||| |||| ||||| ||||| ||| | ||||||| ||||| || || ||||| ||||||||||| |||||| || |||||||||| |
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| T |
42730737 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
42730825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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