View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_high_1 (Length: 717)
Name: NF11168_high_1
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 25 - 705
Target Start/End: Original strand, 11584130 - 11584792
Alignment:
| Q |
25 |
caaccatagtctcggattgcataattctatgatttggtgctttgtgatcaaaattgttttgagagggagttaagttctagtgagtatagatatcactttt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11584130 |
caaccatagtctcggattgcataattctaag------tgctttgtgatcaaaattgttttgagagggatttaagttctagtgagtatagatatcactttt |
11584223 |
T |
|
| Q |
125 |
taaaataacaaagggcaaaacgcacatggatttattgtctgcaatgcatagaagcttataataaagtatgcaattaaaaaataggacaatgtat-aaaaa |
223 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
11584224 |
taaaataacaaa-------------atggatttattgtctgcaatgcatagaagcttataataaagtatgcaattggaaaataggacaatgtatcaaaaa |
11584310 |
T |
|
| Q |
224 |
tcctagatatataaaactagaaaattaagatcaccactaccagtttgtagtgtaataaacaatagtctaattgaaattttgatggttctaaccccaagat |
323 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584311 |
tcctagatatataaaactaggaaattaaaatcaccactaccagtttgtagtgtaataaacaagagtctaattgaaattttgatggttctaaccccaagat |
11584410 |
T |
|
| Q |
324 |
ttatcacaacaaaaaacattgtttaaccaacaagcattttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584411 |
ttatcacaacaaaaaacattgtttaaccaacaagcattttattttagggttgtgacccacttttcaaagctaccaccatattttctcatatactctaccc |
11584510 |
T |
|
| Q |
424 |
caggtttgagatcaaatgacaatccaggagagagctttggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaacca |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
11584511 |
caggtttgagatcaaatgacaatccaggagagagctttggataggaaagcaagcaatttgttgcaacaacattaacccatgaacaatcttccaaaaacca |
11584610 |
T |
|
| Q |
524 |
aatagaaatcttctccaaaactccgccatttaatattaagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaagcgacttt |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11584611 |
aatagaaatcttctccaaaactccgccatttaatattaagtacttaacaaattcaacttcaaactcaccacctgtgtatccccttatacaaagcgacttt |
11584710 |
T |
|
| Q |
624 |
agttgataagtgacgcaccaacacggctccctcaattgccaaaacaagactccaggatacggtaaacaatcattctcattct |
705 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11584711 |
agttgataagtgacgcaccaacatggctccctcaattgccaaaacaagactccagggtacggtaaacaatcattctcattct |
11584792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 423 - 705
Target Start/End: Complemental strand, 30373953 - 30373671
Alignment:
| Q |
423 |
ccaggtttgagatcaaatgacaatccaggagagagctttggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaacc |
522 |
Q |
| |
|
|||||||| |||||||| |||||| || ||| |||||||| || ||||||| ||||| ||||| ||||| | |||||| ||||||||| |||||| |
|
|
| T |
30373953 |
ccaggtttaagatcaaaggacaatttagaagaaagctttgggtacgaaagcagacaattagttgctacaactttgttccatgagcaatcatccaaaaacc |
30373854 |
T |
|
| Q |
523 |
aaatagaaatcttctccaaaactccgccatttaatattaagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaagcgactt |
622 |
Q |
| |
|
||| | ||| ||||| | |||||| || |||||||||||||| || ||||||||| ||||||||| | |||||| ||||||||||||||||| ||||| |
|
|
| T |
30373853 |
aaagtgtaatattctctataactccaccgtttaatattaagtacttaacaaattcatattcaaactctccacctgtatatccccttatacaaagagactt |
30373754 |
T |
|
| Q |
623 |
tagttgataagtgacgcaccaacacggctccctcaattgccaaaacaagactccaggatacggtaaacaatcattctcattct |
705 |
Q |
| |
|
|||||| ||| |||| |||| ||| |||||||| || ||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
30373753 |
tagttggtaaatgacacaccgacatggctcccttttttcccaaaacaagactccaggatacggtaaacaagcattgtcattct |
30373671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 361 - 625
Target Start/End: Original strand, 29785603 - 29785867
Alignment:
| Q |
361 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaatccaggagagagctt |
460 |
Q |
| |
|
|||| ||||||||| | ||||| | ||||||||||| ||||| ||| |||||||| ||||||||| | ||||| ||||||| ||||||||| || |
|
|
| T |
29785603 |
tttagtttagggttctcacccattcatcaaagctacctccatacttttgtatatactcggtcccaggtttcaaatcaattgacaatttaggagagagttt |
29785702 |
T |
|
| Q |
461 |
tggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccatttaatatt |
560 |
Q |
| |
|
|||||| || |||| || ||||| ||||| ||| |||| || || |||||| |||||||||| | ||| || |||| ||||||||||||||||| | |
|
|
| T |
29785703 |
tggatatgaccgcaaacatgcagttgctacaacttcatcccacgagcattcatccaaaaaccaaatggtaatattatccataactccgccatttaatact |
29785802 |
T |
|
| Q |
561 |
aagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaagcgactttag |
625 |
Q |
| |
|
||||| || || || |||| ||||||||| | |||| |||||||| ||||||||| |||||||| |
|
|
| T |
29785803 |
aagtacttaacgaactcaaattcaaactctccacctttgtatccctttatacaaacagactttag |
29785867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 361 - 613
Target Start/End: Complemental strand, 29965340 - 29965088
Alignment:
| Q |
361 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaatccaggagagagctt |
460 |
Q |
| |
|
|||||||||||||| | ||||| | ||||| || |||||||| || |||| ||| | ||||||||| | || || ||||||| ||||||||| || |
|
|
| T |
29965340 |
tttattttagggttctaacccattcatcaaatctgccaccatacttctgtatattctcgatcccaggtttcaaattaattgacaatttaggagagagttt |
29965241 |
T |
|
| Q |
461 |
tggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccatttaatatt |
560 |
Q |
| |
|
|||||| || |||| || ||||| ||||| ||| |||||||||| |||||| |||||||||| | ||| || |||| ||||||||||||||||||| |
|
|
| T |
29965240 |
tggatatgaccgcaaacatccagttgctacaacttcatcccatgaacagtcatccaaaaaccaaatggtaatattatccataactccgccatttaatatt |
29965141 |
T |
|
| Q |
561 |
aagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttataca |
613 |
Q |
| |
|
||||| || || || |||| ||||||||| | |||| |||||||| ||||||| |
|
|
| T |
29965140 |
aagtacttcacgaactcaaattcaaactctccacctttgtatccctttataca |
29965088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 361 - 615
Target Start/End: Complemental strand, 29839390 - 29839136
Alignment:
| Q |
361 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaa-tccaggagagagct |
459 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| | |||||| | ||||| || || | |||| ||||||| |
|
|
| T |
29839390 |
tttattttagggttcggacccactcatcaaagctaccaccatattttcttatatactctatactaggtttcatatcaatagataatttcagg-gagagct |
29839292 |
T |
|
| Q |
460 |
ttggataggaaagcaagcaatttgttgcaacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccatttaatat |
559 |
Q |
| |
|
| ||||| || | || || ||||| || || ||| ||||||| || ||||| |||||||||| | ||| || | || |||||| ||||||||||| |
|
|
| T |
29839291 |
tcggatatgaccgtaaacatgcagttgctactacttcatcccatgagcagtcatctaaaaaccaaattgtaatattattcataactcctccatttaatat |
29839192 |
T |
|
| Q |
560 |
taagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaa |
615 |
Q |
| |
|
|||||| || |||||||||| ||||||||| | |||| || ||||| | ||||||| |
|
|
| T |
29839191 |
taagtacttaacaaattcaagttcaaactctccacctttgcatcccttcatacaaa |
29839136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 387 - 602
Target Start/End: Original strand, 29857007 - 29857222
Alignment:
| Q |
387 |
tcaaagctaccaccatattttctcatatactctaccccaggtttgagatcaaatgacaatccaggagagagctttggataggaaagcaagcaatttgttg |
486 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || |||||| | ||||| || ||| || ||||||||| |||| || | || || |||| |
|
|
| T |
29857007 |
tcaaagctaccaccatattttcttatatactctatcctaggtttcaaatcaatggataatttcggggagagctttagatatgactgtaaacatgcagttg |
29857106 |
T |
|
| Q |
487 |
caacaacatcaacccatgaacaatcatccgaaaaccaaatagaaatcttctccaaaactccgccatttaatattaagtatttgacaaattcaacttcaaa |
586 |
Q |
| |
|
| || || ||| ||||||| || |||||| |||||||||| | ||| || | || |||||| ||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
29857107 |
ctacgacttcatcccatgagcagtcatccaaaaaccaaattgtaatattattcataactcctccatttaatattaagtacttagcaaattcaatttcaaa |
29857206 |
T |
|
| Q |
587 |
ctcacaacctgtgtat |
602 |
Q |
| |
|
||| | |||| ||||| |
|
|
| T |
29857207 |
ctctccacctttgtat |
29857222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 361 - 430
Target Start/End: Complemental strand, 29857473 - 29857404
Alignment:
| Q |
361 |
tttattttagggttatgacccacttttcaaagctaccaccatattttctcatatactctaccccaggttt |
430 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
29857473 |
tttattttagtgttcggacccactcatcaaagctaccaccatattttcttatatattctatcccaggttt |
29857404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 616
Target Start/End: Complemental strand, 29857278 - 29857215
Alignment:
| Q |
553 |
ttaatattaagtatttgacaaattcaacttcaaactcacaacctgtgtatccccttatacaaag |
616 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||| | |||| |||||||| |||||||||| |
|
|
| T |
29857278 |
ttaatattaagtacttaccaaattcaatttcaaactctccacctttgtatccctttatacaaag |
29857215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University