View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_high_14 (Length: 486)

Name: NF11168_high_14
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_high_14
NF11168_high_14
[»] chr1 (3 HSPs)
chr1 (213-478)||(35285669-35285932)
chr1 (113-198)||(35285550-35285635)
chr1 (113-152)||(26127338-26127377)
[»] chr7 (3 HSPs)
chr7 (113-152)||(28359764-28359803)
chr7 (113-152)||(40417636-40417675)
chr7 (120-152)||(6221044-6221076)
[»] chr4 (4 HSPs)
chr4 (113-149)||(36619879-36619915)
chr4 (113-152)||(47742739-47742778)
chr4 (115-149)||(38575812-38575846)
chr4 (115-152)||(48743544-48743581)
[»] chr2 (3 HSPs)
chr2 (120-152)||(45716445-45716477)
chr2 (113-146)||(19511100-19511133)
chr2 (113-149)||(6599344-6599380)
[»] scaffold0007 (1 HSPs)
scaffold0007 (113-152)||(185445-185484)
[»] chr8 (2 HSPs)
chr8 (113-152)||(44362359-44362398)
chr8 (115-147)||(5323831-5323863)
[»] chr3 (1 HSPs)
chr3 (113-150)||(53653190-53653227)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 213 - 478
Target Start/End: Original strand, 35285669 - 35285932
Alignment:
Q  213 ataaatgtgacgggaggaaatatgtaatacgaaaactttcaattgaaaatgagcaatcaatatacctactaattaatgtatgtaatatggnnnnnnnnnn 312  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  35285669 ataaatgtgaccggaggaaatatgtaatacgaagactttcaattgaaaatgagcaatcaatatacctactaattaatgtatgtaatatgg--aaaagaaa 35285766  T
Q  313 nnnnnnnnncttaaataacctaatgaaaacaaaggatatggctggatgcatgccatctaaaaatggcctggnnnnnnnnnnnnntgacatatatcataac 412  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||    
T  35285767 aaaaaaaaacttaaataacctaatgaaaacaaaggatatggctggatgcatgccatctaaaaatggcctggaagaagaaaaaaatgacatatatcataac 35285866  T
Q  413 taatttaatcccaaaaactggaaatagaatcccacaaattttggtatccacctaatgatgatgtcc 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  35285867 taatttaatcccaaaaactggaaatagaatcccacaaattttggtatccacctaataatgaagtcc 35285932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 35285550 - 35285635
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagttcctgcccgggagtaccagttaacaatatttattattaaaatgtacctaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||    
T  35285550 tcaatgtaaaatttgacttttctttctacttttagttcctgtccgggagtaccagctaacaatattcattattaaaatgtatctaa 35285635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 26127338 - 26127377
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagttcct 152  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26127338 tcaatgtaaaatttgacttttctttctacttttagttcct 26127377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 28359764 - 28359803
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagttcct 152  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  28359764 tcaatgcaaaatttgacttttctttctacttttagttcct 28359803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 40417675 - 40417636
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagttcct 152  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  40417675 tcaatgcaaaatttgacttttctttctacatttagttcct 40417636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 6221076 - 6221044
Alignment:
Q  120 aaaatttgacttttctttctacttttagttcct 152  Q
    ||||||||||||||||||| |||||||||||||    
T  6221076 aaaatttgacttttctttccacttttagttcct 6221044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 36619915 - 36619879
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagtt 149  Q
    |||||||||||||||||||||||||||| ||||||||    
T  36619915 tcaatgtaaaatttgacttttctttctatttttagtt 36619879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 47742778 - 47742739
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagttcct 152  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  47742778 tcaatataaaatttgacatttctttctacttttagttcct 47742739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 38575812 - 38575846
Alignment:
Q  115 aatgtaaaatttgacttttctttctacttttagtt 149  Q
    ||||||||||||||||||||||| |||||||||||    
T  38575812 aatgtaaaatttgacttttctttatacttttagtt 38575846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 48743544 - 48743581
Alignment:
Q  115 aatgtaaaatttgacttttctttctacttttagttcct 152  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  48743544 aatgcaaaatttgatttttctttctacttttagttcct 48743581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 45716477 - 45716445
Alignment:
Q  120 aaaatttgacttttctttctacttttagttcct 152  Q
    |||||||||||||||||||||||||||||||||    
T  45716477 aaaatttgacttttctttctacttttagttcct 45716445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 19511133 - 19511100
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctactttta 146  Q
    |||||||||||||||| |||||||||||||||||    
T  19511133 tcaatgtaaaatttgatttttctttctactttta 19511100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 6599380 - 6599344
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagtt 149  Q
    |||||| |||| |||||||||||||||||||||||||    
T  6599380 tcaatgcaaaacttgacttttctttctacttttagtt 6599344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 185484 - 185445
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagttcct 152  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  185484 tcaatgcaaaatttaacttttctttctacttttagttcct 185445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 44362359 - 44362398
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagttcct 152  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  44362359 tcaatgcaaaatttgacatttctttctacttttagttcct 44362398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 5323831 - 5323863
Alignment:
Q  115 aatgtaaaatttgacttttctttctacttttag 147  Q
    |||||||||||||||||||||||||| ||||||    
T  5323831 aatgtaaaatttgacttttctttctaattttag 5323863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 53653190 - 53653227
Alignment:
Q  113 tcaatgtaaaatttgacttttctttctacttttagttc 150  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  53653190 tcaatataaaaattgacttttctttctacttttagttc 53653227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University