View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_high_15 (Length: 474)

Name: NF11168_high_15
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_high_15
NF11168_high_15
[»] chr6 (28 HSPs)
chr6 (19-456)||(5429517-5429954)
chr6 (36-301)||(5366441-5366706)
chr6 (28-306)||(5422130-5422408)
chr6 (37-311)||(5358028-5358302)
chr6 (37-301)||(5070321-5070585)
chr6 (19-313)||(5092856-5093147)
chr6 (19-313)||(5149594-5149888)
chr6 (27-298)||(5174069-5174340)
chr6 (19-313)||(5160390-5160684)
chr6 (97-288)||(5077000-5077191)
chr6 (65-251)||(5394308-5394494)
chr6 (65-299)||(5184762-5184996)
chr6 (31-298)||(5380297-5380563)
chr6 (97-278)||(5107707-5107888)
chr6 (235-306)||(5139448-5139519)
chr6 (65-251)||(5444068-5444254)
chr6 (145-191)||(5105510-5105556)
chr6 (65-407)||(5692730-5693063)
chr6 (19-84)||(5340472-5340537)
chr6 (338-380)||(5174371-5174413)
chr6 (338-404)||(5276186-5276252)
chr6 (338-404)||(5380597-5380663)
chr6 (414-456)||(9372977-9373019)
chr6 (412-441)||(211616-211645)
chr6 (412-457)||(4606018-4606063)
chr6 (169-298)||(5275957-5276086)
chr6 (414-459)||(33858287-33858332)
chr6 (343-403)||(5394577-5394637)
[»] chr4 (4 HSPs)
chr4 (412-459)||(44917476-44917523)
chr4 (416-457)||(26488248-26488289)
chr4 (343-403)||(4350449-4350509)
chr4 (97-244)||(25567037-25567184)
[»] chr3 (9 HSPs)
chr3 (412-459)||(31311348-31311395)
chr3 (412-459)||(37169646-37169693)
chr3 (413-459)||(23551108-23551154)
chr3 (414-459)||(4229320-4229365)
chr3 (412-457)||(38472198-38472243)
chr3 (413-457)||(16202381-16202425)
chr3 (412-456)||(42628773-42628817)
chr3 (409-457)||(46888222-46888270)
chr3 (184-312)||(48016016-48016144)
[»] chr8 (3 HSPs)
chr8 (412-457)||(9135309-9135354)
chr8 (408-457)||(42641376-42641425)
chr8 (412-457)||(42788105-42788150)
[»] chr7 (7 HSPs)
chr7 (412-457)||(736429-736474)
chr7 (412-457)||(1702914-1702959)
chr7 (412-457)||(21973973-21974018)
chr7 (412-457)||(30256077-30256122)
chr7 (414-459)||(36309281-36309326)
chr7 (413-457)||(9327917-9327961)
chr7 (413-457)||(24406942-24406986)
[»] chr5 (3 HSPs)
chr5 (412-457)||(12444237-12444282)
chr5 (412-457)||(13407941-13407986)
chr5 (420-456)||(28442671-28442707)
[»] chr2 (3 HSPs)
chr2 (414-459)||(12612132-12612177)
chr2 (414-459)||(41245621-41245666)
chr2 (415-459)||(27251607-27251651)
[»] chr1 (3 HSPs)
chr1 (412-457)||(28868007-28868052)
chr1 (412-457)||(46939666-46939711)
chr1 (413-457)||(12300795-12300839)
[»] scaffold0217 (1 HSPs)
scaffold0217 (417-457)||(1410-1450)


Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 5429517 - 5429954
Alignment:
Q  19 caaaatgctggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaattt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5429517 caaaatgctggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacaacattatcacacgcaattgaacagtctcgaattt 5429616  T
Q  119 ctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429617 ctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttgaggagttggtgaagataatggagtgtcagagaactataggtcaaattgttct 5429716  T
Q  219 tccattgttctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaaggtggag 318  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429717 tccattgttctacggtgtagatccatctcaagtacgacatcaaatcggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaaggtggag 5429816  T
Q  319 aaggacgaagacgattcattgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtagttaaacttagggt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5429817 aaggacgaagacgattcattgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtaattaaacttagggt 5429916  T
Q  419 taaatatattttttgtccctacaaacatacaaactttt 456  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5429917 taaatatattttttgtccctacaaacatacaaactttt 5429954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 36 - 301
Target Start/End: Original strand, 5366441 - 5366706
Alignment:
Q  36 tgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatcattttttca 135  Q
    |||||| ||||| || | ||| ||| || |||||||||||||||||||| || | |  |  |||||||||||| ||||||||||| | ||| ||||||||    
T  5366441 tgttttcagggacgacgattcgcttcaaagaggagatcacatttcaacatcactcttgcgagcaattgaacagactcgaatttctatcatcgttttttca 5366540  T
Q  136 acaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttctacggtg 235  Q
    | |||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||| ||| || || ||||||||||||||| |||||| |  ||    
T  5366541 aaaaattacgcccaatcgcgatggtgtcttgatgagttgttgaggataatggagtgtcagaaaaccattggacaaattgttcttccagtgttcttcaatg 5366640  T
Q  236 tagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaata 301  Q
    ||||||||||  |||| || |||||||||||||| || |||||||| ||||||| ||| |||||||    
T  5366641 tagatccatcggaagtccgtcatcaaaccggtgaattcggaaaagcatttcaaattcttttgaata 5366706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 28 - 306
Target Start/End: Original strand, 5422130 - 5422408
Alignment:
Q  28 ggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatca 127  Q
    |||||||  ||||| ||||| |||| ||| ||| || |||||||||||||||||||| || |   ||  |||||||||||||||||||| ||| | ||      
T  5422130 ggaattaaagttttcagggacgatgattcgcttcaaagaggagatcacatttcaacatcactcctacgagcaattgaacagtctcgaatgtctatcatag 5422229  T
Q  128 ttttttcaacaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgtt 227  Q
    |||| ||||||||||||||||| || | |||||||||||| |||||| |||| |||||||||||||| ||||| || || ||||||||||| ||  ||||    
T  5422230 ttttctcaacaaattacgcggattcacaatggtgtcttgatgagttgttgaaaataatggagtgtcacagaaccattggacaaattgttctgccggtgtt 5422329  T
Q  228 ctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatt 306  Q
    || ||  |||||||||||  ||||||| | |||||||||||| ||||||||||| ||||||| ||| ||||||||||||    
T  5422330 cttcgacgtagatccatccgaagtacgtcgtcaaaccggtgaatttggaaaagcatttcaaaatcttttgaataagatt 5422408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 37 - 311
Target Start/End: Complemental strand, 5358302 - 5358028
Alignment:
Q  37 gtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatcattttttcaa 136  Q
    ||||||| |||||||  ||| ||| || | |||||||||||||||| | || ||   || |||||| || | |||| ||||||||||||| |||| ||||    
T  5358302 gtttttaaggatgatcattcacttcaaaggggagatcacatttcaaaatcactaatgcaagcaattcaagattctcaaatttctgttatcgttttctcaa 5358203  T
Q  137 caaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttctacggtgt 236  Q
    ||||||| || ||||||| |||||||||||||||||||||| |||||||| ||||||  |||| |  ||| ||| ||||| | ||| |||||||||||||    
T  5358202 caaattatgcagaatcgcaatggtgtcttgaagagttggtggagataatgaagtgtcgcagaattcaaggccaagttgttttgccagtgttctacggtgt 5358103  T
Q  237 agatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaa 311  Q
    |||||||||| |||||||  ||||||| ||||| || |||||||| ||||||||||| ||||| | |||||||||    
T  5358102 agatccatctgaagtacgtaatcaaactggtgagttcggaaaagcatttcaaagtctattgaaaaggatttcaaa 5358028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 37 - 301
Target Start/End: Complemental strand, 5070585 - 5070321
Alignment:
Q  37 gtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatcattttttcaa 136  Q
    ||||||||||| || | ||||||| || |||||||||||||||||||| || |   ||  |||||||||||||||||||| ||| | |||||||| || |    
T  5070585 gtttttagggaagacgattctcttcaaagaggagatcacatttcaacatcactcctacgagcaattgaacagtctcgaatgtctatcatcattttctcga 5070486  T
Q  137 caaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttctacggtgt 236  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||| | ||||| || || ||||||||||| ||| ||||||  |  ||    
T  5070485 caaattatgcggaatcacgatggtgtcttgatgagttggtgaagataatggaatgtaatagaaccattggacaaattgttctgccagtgttcttagacgt 5070386  T
Q  237 agatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaata 301  Q
    |||||||||  |||| || |||||||||  ||| || |||||||| ||||||| ||| |||||||    
T  5070385 agatccatcggaagtccgtcatcaaacctctgaattcggaaaagcatttcaaattcttttgaata 5070321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 5092856 - 5093147
Alignment:
Q  19 caaaatgctggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaattt 118  Q
    |||||||||||||||| ||||||||||||||||| ||| ||| || |||||||||| || ||| ||   |||   ||    |||||| ||||||||||||    
T  5092856 caaaatgctggaattaatgtttttagggatgatgattcgcttcaaagaggagatcaaatatcatca---ttacttcaattgattgaagagtctcgaattt 5092952  T
Q  119 ctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttct 218  Q
    |||| ||  ||||||||| |||||| || || |||||||||||||| || ||||| || |||||||||||||||||| |||| ||||| || || ||| |    
T  5092953 ctgtgattgttttttcaagaaattatgcagattcgcgatggtgtctagatgagttagtaaagataatggagtgtcagcgaaccatagggcagatagttgt 5093052  T
Q  219 tccattgttctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaagg 313  Q
     ||| ||||||||| ||||||||| ||| ||||||| || || |  || || ||||| ||||| ||||||| |||||| ||||  ||||||||||    
T  5093053 gccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcgagtttggtaaagcatttcaaaatctcttaaatagaatttcaaagg 5093147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 5149888 - 5149594
Alignment:
Q  19 caaaatgctggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaattt 118  Q
    ||||||||||||||||  |||||||||||||||| |||||||||| |||||||||||||||||||| || ||   |  || ||  || ||||||  || |    
T  5149888 caaaatgctggaattaaagtttttagggatgatgattctcttaaaagaggagatcacatttcaacatcaatacatctagctatccaaaagtctcagatct 5149789  T
Q  119 ctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttct 218  Q
    |||| ||  ||||||||| ||| || ||  | |||||||||||||| |||||||||||||| |||||||| ||||  |||||   ||| ||  | ||| |    
T  5149788 ctgtgattgttttttcaagaaactatgcaaattcgcgatggtgtctcgaagagttggtgaaaataatggattgtcgtagaacacaagggcagttggtttt 5149689  T
Q  219 tccattgttctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaagg 313  Q
     ||| |||| || | ||||||||||| | ||||||| || |||||  |||| ||||| ||||| |||||||||||||||||||  ||||||||||    
T  5149688 gccagtgttttatgatgtagatccatgtgaagtacgtcaccaaacaagtgagtttggcaaagcatttcaaagtctcttgaatagaatttcaaagg 5149594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 298
Target Start/End: Original strand, 5174069 - 5174340
Alignment:
Q  27 tggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatc 126  Q
    ||||||||  ||||||| ||| |||| ||| ||| || |||||||||||||||||| | || ||  ||| ||||||||| |||||| |||||||||||||    
T  5174069 tggaattagcgtttttaaggacgatgattcacttcaaagaggagatcacatttcaaaatcactactacaagcaattgaagagtctcaaatttctgttatc 5174168  T
Q  127 attttttcaacaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgt 226  Q
    ||||| |||| ||| || || || || || |||||| | || ||||||||||| |||||| | ||||  ||||||||||| || || ||  | ||  |||    
T  5174169 attttctcaaaaaactatgcagattcacggtggtgtttggatgagttggtgaaaataatgaaatgtcgcagaactatagggcagatagtgttgccggtgt 5174268  T
Q  227 tctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttga 298  Q
    |||| | ||| ||||| ||  | |||||||| ||||| ||||| ||||||||||| || |||||||||||||    
T  5174269 tctatgatgttgatccttcggatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttga 5174340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 5160684 - 5160390
Alignment:
Q  19 caaaatgctggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaattt 118  Q
    ||||| |||||| |||  ||||||||||| |||| ||||||| || |||||||||| ||  ||||| |||||   ||  | |||||| | ||||||||||    
T  5160684 caaaacgctggacttaacgtttttagggacgatgattctcttgaaagaggagatcaaataccaacatcattacttcattcgattgaagaatctcgaattt 5160585  T
Q  119 ctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttct 218  Q
    |||| ||  ||||||||| |||||| ||||| ||||||||||||||  | ||||| || ||| ||||||||||||||  ||| ||||| || || ||| |    
T  5160584 ctgtgattgttttttcaagaaattatgcggattcgcgatggtgtctaaatgagttagtaaaggtaatggagtgtcagctaaccatagggcagatagtttt 5160485  T
Q  219 tccattgttctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaagg 313  Q
     ||| ||||||||| ||||||||| ||| ||||||| || || |  ||  | ||||| ||||| ||||||| |||||| ||||  ||||||||||    
T  5160484 gccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcaagtttggtaaagcatttcaaaatctcttaaatagaatttcaaagg 5160390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 5077191 - 5077000
Alignment:
Q  97 gcaattgaacagtctcgaatttctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttga-agagttggtgaagataatggagtgtcag 195  Q
    ||||||||| ||||| |||||  | ||||  ||||||||| |||||| |||| ||||||||||||| |||| |||||||| ||| |||||||||||| |     
T  5077191 gcaattgaagagtctagaattgttattatagttttttcaagaaattatgcgggatcgcgatggtgt-ttgatagagttggagaaaataatggagtgttat 5077093  T
Q  196 agaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaa 288  Q
    ||||||||||| | | | ||||| ||  | || |||||||||||||||||| ||||||| |||||||| ||||| ||||||||| | ||||||    
T  5077092 agaactataggactagtggttctaccggttttttacggtgtagatccatctgaagtacgtcatcaaactggtgaatttggaaaatcgtttcaa 5077000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 5394308 - 5394494
Alignment:
Q  65 gaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatcattttttcaacaaattacgcggaatcgcgatggtgtct 164  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| | ||  |||| ||||  ||||| || || ||||||||||||||    
T  5394308 gaggagattgcatttcaacatcattatcacacgcaattgaacagtctcgaatttctataattgttttctcaaagaattatgctgattcgcgatggtgtct 5394407  T
Q  165 tgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagt 251  Q
      | || ||||  || |||||| ||||||| ||||| || || ||| | ||| ||||| ||||||||  ||||||||| ||| ||||    
T  5394408 gaatgaattggaaaaaataatgaagtgtcaaagaaccattgggcaagtggttgttccagtgttctaccatgtagatccctctgaagt 5394494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 65 - 299
Target Start/End: Complemental strand, 5184996 - 5184762
Alignment:
Q  65 gaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatcattttttcaacaaattacgcggaatcgcgatggtgtct 164  Q
    |||||||| | || |||||| ||||||||| | ||||||||||||||| | ||||| | ||  ||||||| | |||||| ||  | ||| |||||||| |    
T  5184996 gaggagattatatatcaacatcattatcacgctcaattgaacagtctcaagtttctataattgttttttccaaaaattatgccaattcgagatggtgttt 5184897  T
Q  165 tgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagtacgacatcaaacc 264  Q
     || || ||||  ||||||||| ||||||  ||||| ||||| ||| ||||| ||||| ||||||||  |||||| || ||| ||||||| ||||| ||     
T  5184896 ggatgaattggaaaagataatgaagtgtcgcagaaccataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagaca 5184797  T
Q  265 ggtgactttggaaaagcctttcaaagtctcttgaa 299  Q
    || || ||||||| ||| ||||||||||| |||||    
T  5184796 ggcgagtttggaatagcttttcaaagtcttttgaa 5184762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 298
Target Start/End: Original strand, 5380297 - 5380563
Alignment:
Q  31 attactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatcattt 130  Q
    ||||| ||||| | |||||| | ||| ||| || |||||||||| |||||||||   ||| | || | ||||||||| |||  ||||||| ||||  |||    
T  5380297 attacagttttcatggatgaagattcacttcaaagaggagatcatatttcaacattgttaccgcaagaaattgaacattctaaaatttctattattgttt 5380396  T
Q  131 tttcaacaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttcta 230  Q
    |||||| |||||| || || || |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||  || || || || ||  |||||||    
T  5380397 tttcaagaaattatgcagattcacgatggtgtcttgatgagttggtgaagataat-gagtgtcacagaaccatagcacagatagtgctaccggtgttcta 5380495  T
Q  231 cggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttga 298  Q
     | ||| ||||| |   | ||||| || ||||| ||||| |||||| |||| ||| ||||||||||||    
T  5380496 tgatgttgatcccttggaggtacgtcaccaaactggtgagtttggacaagcttttgaaagtctcttga 5380563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 5107888 - 5107707
Alignment:
Q  97 gcaattgaacagtctcgaatttctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtgtcaga 196  Q
    ||||||||| | |||  ||||||| |||||||||| |||| |||||| ||| ||||||| ||||||||  | |||||| ||| ||||||||||||||  |    
T  5107888 gcaattgaagaatctgaaatttctattatcattttctcaaaaaattatgcgaaatcgcgttggtgtctaaatgagttgttgacgataatggagtgtcgca 5107789  T
Q  197 gaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaa 278  Q
    |||  ||||| ||  | || |||||  ||||||| | ||| ||||| ||  ||||||| |||||||| ||||| ||||||||    
T  5107788 gaagcatagggcaggtggtgcttccggtgttctatgatgttgatccctcagaagtacgtcatcaaactggtgagtttggaaa 5107707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 5139519 - 5139448
Alignment:
Q  235 gtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcctttcaaagtctcttgaataagatt 306  Q
    |||||||||||| ||||||| |||||||||||||| || |||||||| ||||||| ||| || |||||||||    
T  5139519 gtagatccatctgaagtacgtcatcaaaccggtgaattcggaaaagcttttcaaaatcttttaaataagatt 5139448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 5444068 - 5444254
Alignment:
Q  65 gaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatcattttttcaacaaattacgcggaatcgcgatggtgtct 164  Q
    ||||| ||||||||||| || |||||||||  ||||||||||| |||| ||||||| | ||  ||||||||| |||||| || || |||||||||||| |    
T  5444068 gaggatatcacatttcatcatcattatcacgagcaattgaacaatctcaaatttctataattgttttttcaaaaaattatgctgattcgcgatggtgt-t 5444166  T
Q  165 tgaa-gagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagt 251  Q
    |||| || |||||||| |||||| | ||||  | ||  ||||| ||| | ||| | ||| |||||||| |||||||||| ||| ||||    
T  5444167 tgaatgaattggtgaaaataatgaattgtcgtaaaaacataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagt 5444254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 5105556 - 5105510
Alignment:
Q  145 gcggaatcgcgatggtgtcttgaagagttggtgaagataatggagtg 191  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||    
T  5105556 gcggaatcgcaatggtgtcttgaagagttggtgaagataacggagtg 5105510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 407
Target Start/End: Complemental strand, 5693063 - 5692730
Alignment:
Q  65 gaggagatcacatttcaacagcattatcacacgcaattgaacagtctcgaatttctgttatcattttttcaacaaattacgcggaatcgcgatggtgtct 164  Q
    |||||||||||||| ||||| || ||  ||| ||||| ||| |||||  ||||||||||||  |||| |||| ||| || || || |||   |||||| |    
T  5693063 gaggagatcacattgcaacatcactactacaagcaatcgaagagtctataatttctgttatagttttctcaaaaaactatgcagattcgtcgtggtgt-t 5692965  T
Q  165 tgaa-gagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagtacgacatcaaac 263  Q
    |||| |||||||| || |||||||||||||  ||||||||||| || || ||  | ||  ||||||| | ||| ||||| ||  | |||||||| |||||    
T  5692964 tgaatgagttggttaaaataatggagtgtcgcagaactatagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaac 5692865  T
Q  264 cggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaaggtggagaaggacgaagacgattcattgaaatggagagacgcacttcgtgag 363  Q
     ||||| ||||||||||| || |||||||||||||  |  |||||||||       | |||  |||| | ||  |||||||||||||||| ||| |||||    
T  5692864 aggtgagtttggaaaagcgttccaaagtctcttgagcagaatttcaaag-------aagac--agacaagtcgctgaaatggagagacgcgcttagtgag 5692774  T
Q  364 gcagctgaccttgctggatttgtagttttaaattccaggtagtt 407  Q
    |  ||||  |||||||| |||||||||  ||||| |||||||||    
T  5692773 gttgctgggcttgctggctttgtagttccaaatttcaggtagtt 5692730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 5340472 - 5340537
Alignment:
Q  19 caaaatgctggaattactgtttttagggatgatgtttctcttaaaggaggagatcacatttcaaca 84  Q
    |||||||||||||||||||||||||| || |||| ||| ||| || |||| ||||| |||||||||    
T  5340472 caaaatgctggaattactgtttttagagacgatgattcgcttcaaagaggtgatcaaatttcaaca 5340537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 5174371 - 5174413
Alignment:
Q  338 tgaaatggagagacgcacttcgtgaggcagctgaccttgctgg 380  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||    
T  5174371 tgaaatggagagatgcacttcgtgaggctgctgagcttgctgg 5174413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 5276186 - 5276252
Alignment:
Q  338 tgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggta 404  Q
    ||||||||||||| |||||||||||||  |||||  ||||||| |||||||||  ||||| ||||||    
T  5276186 tgaaatggagagatgcacttcgtgaggttgctgagattgctggctttgtagttccaaatttcaggta 5276252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 5380597 - 5380663
Alignment:
Q  338 tgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggta 404  Q
    ||||||||||||| || |||| || ||| |||| | ||||||||||||||||| |||| ||||||||    
T  5380597 tgaaatggagagaggctcttcatggggctgctgcctttgctggatttgtagttctaaactccaggta 5380663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 9372977 - 9373019
Alignment:
Q  414 agggttaaatatattttttgtccctacaaacatacaaactttt 456  Q
    |||||||||||||||||| ||||||||||| |||| |||||||    
T  9372977 agggttaaatatatttttagtccctacaaatataccaactttt 9373019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 211645 - 211616
Alignment:
Q  412 ttagggttaaatatattttttgtccctaca 441  Q
    ||||||||||||||||||||||||||||||    
T  211645 ttagggttaaatatattttttgtccctaca 211616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 4606063 - 4606018
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  4606063 ttagggttaaatatgtttttggtccctataaatatacaaacttttc 4606018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 298
Target Start/End: Original strand, 5275957 - 5276086
Alignment:
Q  169 gagttggtgaagataatggagtgtcagagaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagtacgacatcaaaccggtg 268  Q
    ||||||||||| |||||| | ||||  ||||||||||| || || ||  | ||  ||||||| | ||| ||||| ||  | |||||||| ||||| ||||    
T  5275957 gagttggtgaaaataatgaaatgtcgcagaactatagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtg 5276056  T
Q  269 actttggaaaagcctttcaaagtctcttga 298  Q
    | ||||||||||| || |||||||||||||    
T  5276057 agtttggaaaagcgttccaaagtctcttga 5276086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 33858287 - 33858332
Alignment:
Q  414 agggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  33858287 agggttaaatatatttttggtccctataaatataccaacttttcat 33858332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 5394577 - 5394637
Alignment:
Q  343 tggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggt 403  Q
    |||| ||| || ||||||| |||||| | |||||| ||||||||||||||||||| |||||    
T  5394577 tggaaagaggctcttcgtgtggcagcaggccttgcaggatttgtagttttaaatttcaggt 5394637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 459
Target Start/End: Original strand, 44917476 - 44917523
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    |||||||||||||| ||||||||||||| ||| |||| ||||||||||    
T  44917476 ttagggttaaatatgttttttgtccctataaatataccaacttttcat 44917523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 26488289 - 26488248
Alignment:
Q  416 ggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||| ||||| ||||||||||| |||||||||||||    
T  26488289 ggttaaatatgtttttggtccctacaaatatacaaacttttc 26488248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 4350449 - 4350509
Alignment:
Q  343 tggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggt 403  Q
    |||||||||||||||||||| || |||| |||||| |||||||| ||  | ||||||||||    
T  4350449 tggagagacgcacttcgtgatgctgctggccttgcaggatttgttgtcctgaattccaggt 4350509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 25567037 - 25567184
Alignment:
Q  97 gcaattgaacagtctcgaatttctgttatcattttttcaacaaattacgcggaatcgcgatggtgtcttgaa-gagttggtgaagataatggagtgtcag 195  Q
    ||||| ||||| ||||||||| ||||  |  |||||||||   |||||||||| ||   ||||||| ||||| |||||||||||||||||| |||||||     
T  25567037 gcaatcgaacaatctcgaattgctgtggttgttttttcaaagcattacgcggattcaaaatggtgt-ttgaatgagttggtgaagataatgaagtgtcat 25567135  T
Q  196 agaactataggtcaaattgttcttccattgttctacggtgtagatccat 244  Q
    ||| | ||| | || |||||| | ||| ||||||| | |||||||||||    
T  25567136 agagccataaggcagattgttttgccagtgttctatgatgtagatccat 25567184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 31311395 - 31311348
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  31311395 ttagggttaaatatgtttttggtccctataaatatacaaacttttcat 31311348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 459
Target Start/End: Original strand, 37169646 - 37169693
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  37169646 ttagggttaaatatatttttggtccctataaatataccaacttttcat 37169693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 23551154 - 23551108
Alignment:
Q  413 tagggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    ||||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  23551154 tagggttaaatatatttttggtccctataaatataccaacttttcat 23551108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 4229320 - 4229365
Alignment:
Q  414 agggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    |||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  4229320 agggttaaatatgtttttggtccctataaatatacaaacttttcat 4229365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 38472198 - 38472243
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  38472198 ttagggttaaatatatttttagtccctataaatatactaacttttc 38472243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 16202381 - 16202425
Alignment:
Q  413 tagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    ||||||||||||| ||||||||||||| ||| |||| ||||||||    
T  16202381 tagggttaaatatgttttttgtccctataaaaataccaacttttc 16202425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 42628773 - 42628817
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaactttt 456  Q
    |||||||||||||||||||| ||||||| ||| |||| |||||||    
T  42628773 ttagggttaaatatatttttggtccctataaatataccaactttt 42628817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 46888270 - 46888222
Alignment:
Q  409 aacttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    ||||||||||||||||| ||||||||||||| ||| |||  ||||||||    
T  46888270 aacttagggttaaatatgttttttgtccctataaatatatcaacttttc 46888222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 48016144 - 48016016
Alignment:
Q  184 atggagtgtcagagaactataggtcaaattgttcttccattgttctacggtgtagatccatctcaagtacgacatcaaaccggtgactttggaaaagcct 283  Q
    ||||||||||| | ||| ||||| ||| | ||||| ||  |||| |||  ||||||||||||  ||||||| |||||||  ||||| || |||| ||| |    
T  48016144 atggagtgtcacaaaaccataggccaagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcggaatagcat 48016045  T
Q  284 ttcaaagtctcttgaataagatttcaaag 312  Q
    |||||| ||| ||||  ||||||||||||    
T  48016044 ttcaaaatcttttgacgaagatttcaaag 48016016  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 9135309 - 9135354
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  9135309 ttagggttaaatatatttttagtccctataaatataccaacttttc 9135354  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 42641425 - 42641376
Alignment:
Q  408 aaacttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||| ||||| ||||||| ||| |||| ||||||||    
T  42641425 aaacttagggttaaatatgtttttggtccctataaatatactaacttttc 42641376  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 42788150 - 42788105
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||||| ||||||| ||| ||| |||||||||    
T  42788150 ttagggttaaatatatttttagtccctataaatatataaacttttc 42788105  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 736474 - 736429
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    ||||||||||||||||||||| |||||| ||| |||| ||||||||    
T  736474 ttagggttaaatatattttttctccctataaatataccaacttttc 736429  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 1702959 - 1702914
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  1702959 ttagggttaaatatatttttggtccctataaatataccaacttttc 1702914  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 21974018 - 21973973
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  21974018 ttagggttaaatatatttttggtccctataaatatactaacttttc 21973973  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 30256122 - 30256077
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  30256122 ttagggttaaatatgtttttggtccctataaatatacaaacttttc 30256077  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 36309326 - 36309281
Alignment:
Q  414 agggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    |||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  36309326 agggttaaatatttttttggtccctataaatatacaaacttttcat 36309281  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 9327917 - 9327961
Alignment:
Q  413 tagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    ||||||||||||| ||||||||||||| ||| |||| ||||||||    
T  9327917 tagggttaaatatgttttttgtccctataaatataccaacttttc 9327961  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 24406986 - 24406942
Alignment:
Q  413 tagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    ||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  24406986 tagggttaaatatgtttttggtccctataaatatacaaacttttc 24406942  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 12444237 - 12444282
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  12444237 ttagggttaaatatatttttggtccctataaatataccaacttttc 12444282  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 13407941 - 13407986
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  13407941 ttagggttaaatatatttttggtccctataaatataccaacttttc 13407986  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 28442707 - 28442671
Alignment:
Q  420 aaatatattttttgtccctacaaacatacaaactttt 456  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  28442707 aaatatattttttgtccttacaaatatacaaactttt 28442671  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 12612177 - 12612132
Alignment:
Q  414 agggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  12612177 agggttaaatatatttttggtccctataaatataccaacttttcat 12612132  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 41245621 - 41245666
Alignment:
Q  414 agggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    |||||||||||| ||||||||||||| ||| |||| ||||||||||    
T  41245621 agggttaaatatgttttttgtccctataaatataccaacttttcat 41245666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 27251607 - 27251651
Alignment:
Q  415 gggttaaatatattttttgtccctacaaacatacaaacttttcat 459  Q
    ||||||||||| ||||| ||||||||||| |||| ||||||||||    
T  27251607 gggttaaatatgtttttggtccctacaaatatacgaacttttcat 27251651  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 28868007 - 28868052
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  28868007 ttagggttaaatatgtttttggtccctataaatatacaaacttttc 28868052  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 46939711 - 46939666
Alignment:
Q  412 ttagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  46939711 ttagggttaaatatatttttggtccctataaatataccaacttttc 46939666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 12300839 - 12300795
Alignment:
Q  413 tagggttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    ||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  12300839 tagggttaaatatatttttggtccctataaatatactaacttttc 12300795  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 1450 - 1410
Alignment:
Q  417 gttaaatatattttttgtccctacaaacatacaaacttttc 457  Q
    ||||||||| ||||||||||||||||| |||| ||||||||    
T  1450 gttaaatatgttttttgtccctacaaatataccaacttttc 1410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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