View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_high_17 (Length: 462)
Name: NF11168_high_17
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Original strand, 14229814 - 14230252
Alignment:
| Q |
19 |
acaaacttccaatcagaaccaaagcatgatgtttattggtgatgtttcttgtgccaatgagagctgttgacaaacaagagatcaacttccagctactgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14229814 |
acaaacttccaatcagaaccaaagcatgatgtttattggtgatgtttcttgtgccaatgagagctgttgacaaacaagagatcaacttccagctactgca |
14229913 |
T |
|
| Q |
119 |
aacgatcaaaactttgactaacctacttactatcaacagattcattaaactgagatcttatgcaatcctccgacgacatcctaaagacattcctcgcgcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14229914 |
aacgatcaaaactttgactaacctacttactatcaacagattcattaaactgagatcttatgcaatcctccgacgacatcctaaagacattcctcacgcc |
14230013 |
T |
|
| Q |
219 |
aagctctgaaacaaacaccctgctgcctcttcaattctccacttcagctctttgccaagttaatttgattacatatcaggtgcccatgtaccatttgctg |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
14230014 |
aagctctgaaacaaaaaccctgctgcctcttcaattctccacttcagctctttgccaagttaatttgattacatatcaggtgaccatgtaacatttgctg |
14230113 |
T |
|
| Q |
319 |
acatgagttcctttcctttgatnnnnnnnnnttactgatcgacattactcgaatactccctgtctagacttaccgatgctccatgtccccaataaacacc |
418 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
14230114 |
acatgagttcctttcctttgataaaaaaaaattactgatccacattactcgaatactccctgtctagactgactgatgctccatatccccaataaacacc |
14230213 |
T |
|
| Q |
419 |
ttgcatcagcaaaccatcagaactgctgcctttgcttct |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14230214 |
ttgcatcagcaaaccatcagaactgctgcctttccttct |
14230252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 14219855 - 14219991
Alignment:
| Q |
58 |
tgatgtttcttgtgccaatgagagctgttgacaaacaagagatcaacttccagctactgcaaacgatcaaaactttgactaacctacttactatcaacag |
157 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||| ||||||| ||||| |||| | ||||||||| || | ||||||||| |
|
|
| T |
14219855 |
tgatgtttcttttgccattgagagcggttgacaaacaagagatcaccttccagcaactgcaagcgatctaaacatggactaacctgctaattatcaacag |
14219954 |
T |
|
| Q |
158 |
attcattaaactgagatcttatgcaatcctccgacga |
194 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
14219955 |
atgcattaaactgagatcttatgcaagcctccgacga |
14219991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 14220006 - 14220070
Alignment:
| Q |
276 |
agttaatttgattacatatcaggtgcccatgtaccatttgctgacatgagttcctttcctttgat |
340 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
14220006 |
agttaatttgattacatatcagatgactatgtaccatttgcttacttgagttcctttcctttgat |
14220070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University