View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_22 (Length: 418)
Name: NF11168_high_22
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 37084799 - 37085191
Alignment:
| Q |
20 |
agcggatgtggcaagcaaatgagcaaaaaactgtgccacatttcggatttgatttgtttgaagcctgtgaatggttgacaactgttgagcaaaacacttt |
119 |
Q |
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| T |
37084799 |
agcggatgtggcaagcaaatgagcaaaaaactgtgccacatttcggagttgatttgtttgaagcctgtgaattgttgacaactgttgagcaaaacacttt |
37084898 |
T |
|
| Q |
120 |
tcaaagttttgttgataaactttgttgatcatacaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcagcattgtagaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084899 |
tcaaagttttgttgataaactttgttgatcatacaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcagcattgtagaa |
37084998 |
T |
|
| Q |
220 |
tcatattgcataattggatctcttgacctttctggcgatgaataattctgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084999 |
tcatattgcataattggatctcttgacctttctggcgatgaataattctgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaa |
37085098 |
T |
|
| Q |
320 |
atatatagcccttcgaagattcacaagattggtatcggtttcatcccttatctgcatatgcttctcgccatcttcttcatatatctgtgctgc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
37085099 |
atatatagcccttcgaagattcacaagattggtatcggtttcatcccttatctgcatctgcttctcgccatcttcttcatacatttgtgctgc |
37085191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 24 - 399
Target Start/End: Complemental strand, 37184477 - 37184102
Alignment:
| Q |
24 |
gatgtggcaagcaaatgagcaaaaaactgtgccacatttcggatttgatttgtttgaagcctgtgaatggttgacaactgttgagcaaaacacttttcaa |
123 |
Q |
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| T |
37184477 |
gatgtggcaagcaaatgagcaaaaaactgtgccacatttcggagttgatttgtttgaagcctgtgaattgttgacaactgttgagcaaaacacttttcaa |
37184378 |
T |
|
| Q |
124 |
agttttgttgataaactttgttgatcatacaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcat |
223 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37184377 |
agttttgttgataaactttgttgatcatacaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcat |
37184278 |
T |
|
| Q |
224 |
attgcataattggatctcttgacctttctggcgatgaataattctgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
37184277 |
attgcataattggatctcttgacctttctggcgatgaataattctgagaagcttatgaccagcttcctcaaaatctaaacacgacataatggtcagatat |
37184178 |
T |
|
| Q |
324 |
atagcccttcgaagattcacaagattggtatcggtttcatcccttatctgcatatgcttctcgccatcttcttcat |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37184177 |
atagcccttcgaagattcacaagattggtatcggcttcatcccttatctgcatatgcttctcgccatcttcttcat |
37184102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 14712516 - 14712580
Alignment:
| Q |
109 |
caaaacacttttcaaagttttgttgataaactttgttgatcatacaaaaacgctcccccagaaga |
173 |
Q |
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|||||||||| ||||| |||| ||||| ||||||||||||||||||||||||| ||| |||||| |
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| T |
14712516 |
caaaacacttctcaaaattttcttgatgcactttgttgatcatacaaaaacgctacccaagaaga |
14712580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 377
Target Start/End: Complemental strand, 11339206 - 11339099
Alignment:
| Q |
270 |
agaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagattggtatcggtttcatccctta |
369 |
Q |
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|||||||||||||| |||||||||||||||| || ||||| || || | ||| |||| ||| || ||||| |||||||| || || |||||||| ||| |
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| T |
11339206 |
agaagcttatgacctgcttcctcaaaatctacactggacattattgttagatagatagtcctccgcagattgacaagattagtctctgtttcatctttta |
11339107 |
T |
|
| Q |
370 |
tctgcata |
377 |
Q |
| |
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|||||||| |
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|
| T |
11339106 |
tctgcata |
11339099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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