View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_high_3 (Length: 661)

Name: NF11168_high_3
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_high_3
NF11168_high_3
[»] chr7 (2 HSPs)
chr7 (184-646)||(4487193-4487655)
chr7 (11-193)||(4486993-4487176)
[»] chr5 (6 HSPs)
chr5 (272-629)||(19022871-19023228)
chr5 (272-629)||(22066770-22067127)
chr5 (11-193)||(19022423-19022601)
chr5 (25-193)||(22066319-22066483)
chr5 (184-274)||(22066500-22066590)
chr5 (184-274)||(19022623-19022714)
[»] chr8 (2 HSPs)
chr8 (272-463)||(22619698-22619889)
chr8 (455-627)||(22621256-22621428)
[»] chr3 (1 HSPs)
chr3 (11-191)||(10316650-10316831)
[»] scaffold0131 (1 HSPs)
scaffold0131 (51-274)||(13514-13759)
[»] chr2 (1 HSPs)
chr2 (451-623)||(43254850-43255026)
[»] chr6 (3 HSPs)
chr6 (357-426)||(32091515-32091584)
chr6 (207-271)||(32091979-32092045)
chr6 (204-274)||(12287137-12287209)
[»] chr1 (1 HSPs)
chr1 (204-274)||(9391906-9391978)


Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 184 - 646
Target Start/End: Original strand, 4487193 - 4487655
Alignment:
Q  184 caacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaaacccgataa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4487193 caacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaatagaaacccgataa 4487292  T
Q  284 cctcggcctatgttttctcaacaaaaaatataccccctagcaaaaagtgnnnnnnngaggacataactagatcaattcaacactactactcttatatcaa 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  4487293 cctcggcctatgttttctcaacaaaaaatataccccctagcaaaaagtgtaaaaaagaggacataactagatcaattcaacactactactcttatatcaa 4487392  T
Q  384 tataaagatcaattgtgccacgtaacaataattaatactcaacatacatattatgtaatcaaacaacaccaaaataaaaacaagttttgaatggaagatt 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487393 tataaagatcaattgtgccacgtaacaataattaatactcaacatacatattatgtaatcaaacaacaccaaaataaaaacaagttttgaatggaagatt 4487492  T
Q  484 cataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaaccagcttaactaattcaccaaaacaaatccagttttt 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487493 cataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaaccagcttaactaattcaccaaaacaaatccagttttt 4487592  T
Q  584 gtataaaaccagctggttcagttttgacatacaaaccaaaaaatgaaattgaagggaataact 646  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4487593 gtataaaaccaggtggttcagttttgacatacaaaccaaaaaatgaaattgaagggaataact 4487655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 4486993 - 4487176
Alignment:
Q  11 cacagaactagcaaagacccaaaaaataaagcaaaatacagccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4486993 cacagaactagcaaagacccaaaaaataaagcaaaatacagccattgtaattacgcctattgatcacccaacaacctgctggacctatgacagcccccac 4487092  T
Q  111 gcaacaaagaaaaaactgcacttc-catcaagtaaaaacgcagccaacagacccacaaaaacccgcaaaacctccaacacaaca 193  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  4487093 gcaacaaagaaaaaactgcacttcacatcaagtaaaaatgcagccagcagacccacaaaaacccgcaaaacctccaacacaaca 4487176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 272 - 629
Target Start/End: Original strand, 19022871 - 19023228
Alignment:
Q  272 gaaacccgataacctcggcctatgttttctcaacaaaaaatataccccctagcaaaaagtgnnnnnnngaggacataactagatcaattcaacactacta 371  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  19022871 gaaacctgataacctcggcctatgttttctcaacaaaaaatataccccctagcaaaaagtggaaaaaagaggacataactagatcaattcaacactacta 19022970  T
Q  372 ctcttatatcaatataaagatcaattgtgccacgtaacaataattaatactcaacatacatattatgtaatcaaacaacaccaaaataaaaacaagtttt 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  19022971 ctcttatatcaatataaagatcaattgtgccacgtaacaataattaatactcaacatatatattatgtaatcaaacaacaccaaaatcaaaacaagtttt 19023070  T
Q  472 gaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaaccagcttaactaattcaccaaaaca 571  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19023071 gaataaaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaaccagcttaactaattcaccaaaaca 19023170  T
Q  572 aatccagtttttgtataaaaccagctggttcagttttgacatacaaaccaaaaaatga 629  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19023171 aatccagtttttgtataaaaccggctggttcagttttgacatacaaaccaaaaaatga 19023228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 272 - 629
Target Start/End: Original strand, 22066770 - 22067127
Alignment:
Q  272 gaaacccgataacctcggcctatgttttctcaacaaaaaatataccccctagcaaaaagtgnnnnnnngaggacataactagatcaattcaacactacta 371  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  22066770 gaaacctgataacctcggcctatgttttctcaacaaataatataccccctagcaaaaagtagaaaaaagaggacataactagatcaattcaacactacta 22066869  T
Q  372 ctcttatatcaatataaagatcaattgtgccacgtaacaataattaatactcaacatacatattatgtaatcaaacaacaccaaaataaaaacaagtttt 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  22066870 ctcttatatcaatataaagatcaattgtgccacgtaacaataattaatactcaacatatatattatgtaatcaaacaacaccaaaatcaaaacaagtttt 22066969  T
Q  472 gaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaaccagcttaactaattcaccaaaaca 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22066970 gaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaacaagcttaactaattcaccaaaaca 22067069  T
Q  572 aatccagtttttgtataaaaccagctggttcagttttgacatacaaaccaaaaaatga 629  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22067070 aatccagtttttgtataaaaccggctggttcagttttgacatacaaaccaaaaaatga 22067127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 19022423 - 19022601
Alignment:
Q  11 cacagaactagcaaagacccaaaaaataaagcaaaatacagccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccac 110  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||     ||| |||||||    
T  19022423 cacagaagtagcacagacccaaaaaataaagcaaaatacagccaccgtaattacgcctattgatcaccccacaacctgctggac-----acaacccccac 19022517  T
Q  111 gcaacaaagaaaaaactgcacttc-catcaagtaaaaacgcagccaacagacccacaaaaacccgcaaaacctccaacacaaca 193  Q
     |||||||||||||| |||||| | ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  19022518 acaacaaagaaaaaattgcactgcacatcaagtaaaaacgcagcctgcagaccgacaaaaacccgcaaaacctccaacacaaca 19022601  T

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Target: chr5; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 22066319 - 22066483
Alignment:
Q  25 agacccaaaaaataaagcaaaatacagccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccacgcaacaaagaaaaa 124  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||     |||||||||||||||||||||||||    
T  22066319 agacccaaaaaataaagcaaaatacagccaccgtaattacgcctattgatcaccccacaacctgctggac-----acagcccccacgcaacaaagaaaaa 22066413  T
Q  125 actgcacttc-catcaagtaaaaacgcagccaacagacccacaaaaacccgcaaaacctccaacacaaca 193  Q
    |||||||| | |||   ||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  22066414 actgcactgcacatattgtaaaaacgcagcctgcagacccacaaaaacccgcaaaatctccaacacaaca 22066483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 22066500 - 22066590
Alignment:
Q  184 caacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22066500 caacacaacacaacacctatcacagtcctctagtttgtgttccattcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaa 22066590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 19022623 - 19022714
Alignment:
Q  184 caacacaacacaacacctatcacagtcctatagtttgtgttccattcgaaag-aaaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19022623 caacacaacacaacacctatcacagtcctctagtttgtgttccattcgaaagaaaaaaatgataagacaagaatctaattcacaaaacagaa 19022714  T

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Target: chr8 (Bit Score: 147; Significance: 4e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 272 - 463
Target Start/End: Original strand, 22619698 - 22619889
Alignment:
Q  272 gaaacccgataacctcggcctatgttttctcaacaaaaaatataccccctagcaaaaagtgnnnnnnngaggacataactagatcaattcaacactacta 371  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||       ||||||||||||||||||||||||||||||||    
T  22619698 gaaacccgataacctcgacttatgttttctcaacaaaaaatataccccttggcaaaaagtggaaaaaagaggacataactagatcaattcaacactacta 22619797  T
Q  372 ctcttatatcaatataaagatcaattgtgccacgtaacaataattaatactcaacatacatattatgtaatcaaacaacaccaaaataaaaa 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  22619798 ctcttatatcaatataaagatcaattgtgccacgtaacaataattaatactcaacatatatattatgtaatcaaacaacaccaaaatcaaaa 22619889  T

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Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 455 - 627
Target Start/End: Original strand, 22621256 - 22621428
Alignment:
Q  455 aaataaaaacaagttttgaatggaagattcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaaccagctta 554  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  22621256 aaatcaaaacaagtttttaatggaagattcatacattgactacaaccaaaaccaaaagttgagactggttcaatacatgcaatggttcaaaaccaactta 22621355  T
Q  555 actaattcaccaaaacaaatccagtttttgtataaaaccagctggttcagttttgacatacaaaccaaaaaat 627  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621356 actaatacacaaaaagaaatccagtttttgtataaaaccagctggttcagttttgacatacaaaccaaaaaat 22621428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 10316650 - 10316831
Alignment:
Q  11 cacagaactagcaaagacccaaaaaataaagcaaaatacagccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccac 110  Q
    ||||||| ||||| |||||||||||||||| |||| ||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||    
T  10316650 cacagaagtagcatagacccaaaaaataaatcaaactacagccaccgtaattacgcctattgatcaccccacaacctgctggacctatgacagccctcac 10316749  T
Q  111 gcaacaaagaaaaaactgcacttc-catcaagtaaaaacgcagccaacagacccacaaaaacccgcaaaacctccaacacaa 191  Q
    |||||||||||||||||||| | | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  10316750 gcaacaaagaaaaaactgcattgcacatcaagtaaaaacacagcctacagacccacaaaaacccgcaaaacctccaacacaa 10316831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 51 - 274
Target Start/End: Complemental strand, 13759 - 13514
Alignment:
Q  51 gccactgtaatttcgcctattgatcacccaacaacctgctggacctatgacagcccccacgcaacaaagaaaaaactgcacttc-catcaagtaaaaacg 149  Q
    ||||| ||||||  ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| || || | ||||||| |||||||    
T  13759 gccaccgtaattatgcctattgatcactccacaacctgctggacctatgacagcccccacgcaacatagaaaaaaccgcgctgcacatcaaggaaaaacg 13660  T
Q  150 cagccaacagacccacaaaaacccgcaaaacctc---------------------caacacaacacaacacctatcacagtcctatagtttgtgttccat 228  Q
    |||| | ||||||||||||||||||| |||||||                     ||||||||||||||||||| | ||||||| |||||||||||||||    
T  13659 cagctagcagacccacaaaaacccgcgaaacctcaaacacaacaggcagcagccacaacacaacacaacacctaacgcagtcctctagtttgtgttccat 13560  T
Q  229 tcgaaagaaaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    || |||||||||| ||||||||| ||||||| ||||||||||||||    
T  13559 tcaaaagaaaaaaagataagacaggaatctatttcacaaaacagaa 13514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 451 - 623
Target Start/End: Original strand, 43254850 - 43255026
Alignment:
Q  451 accaaaataaaaacaagttttgaatggaagat---tcataaattgactacaaccaaaaccaaaagttgagactggtttaatacatgcaatggttcaaaac 547  Q
    |||||||| |||||||||||||||| ||||||   ||||| |||||||  |||||||||| ||| ||||||||||||  |||||| || | | |||||||    
T  43254850 accaaaatcaaaacaagttttgaatcgaagattcatcatatattgacttaaaccaaaacc-aaatttgagactggttctatacatacactagctcaaaac 43254948  T
Q  548 cag--cttaactaattcaccaaaacaaatccagtttttgtataaaaccagctggttcagttttgacatacaaaccaaa 623  Q
    |||  |  ||| |||||||||| | ||||||||| ||| ||| |||| |||  ||||  |||||| ||||||||||||    
T  43254949 cagtccaaaaccaattcaccaatataaatccagtatttttatcaaacaagccagttcgattttgaaatacaaaccaaa 43255026  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 32091584 - 32091515
Alignment:
Q  357 aattcaacactactactcttatatcaatataaagatcaattgtgccacgtaacaataattaatactcaac 426  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||||| ||   | ||||||||||||||    
T  32091584 aattcagcactactactcttatatcaatatatagatcaactgtgccacatagagaaaattaatactcaac 32091515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 32092045 - 32091979
Alignment:
Q  207 agtcctatagtttgtgttccattcgaaaga--aaaaatgataagacaagaatctaattcacaaaaca 271  Q
    ||||||||||||||||||||||| ||||||  ||| || | |||| | |||||||||||||||||||    
T  32092045 agtcctatagtttgtgttccattagaaagaacaaagattaaaagataggaatctaattcacaaaaca 32091979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 12287137 - 12287209
Alignment:
Q  204 cacagtcctatagtttgtgttccattcgaaaga--aaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    ||||||||| |||||||||||||||| ||||||  ||| || | |||| | ||||||||||||||||| ||||    
T  12287137 cacagtcctgtagtttgtgttccattagaaagaacaaagattaaaagataggaatctaattcacaaaagagaa 12287209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 9391906 - 9391978
Alignment:
Q  204 cacagtcctatagtttgtgttccattcgaaaga--aaaaatgataagacaagaatctaattcacaaaacagaa 274  Q
    ||||||| | |||||||||||||||| ||||||  |||||| | || | | ||||||||||||||||||||||    
T  9391906 cacagtcttgtagtttgtgttccattagaaagaacaaaaattaaaaaataggaatctaattcacaaaacagaa 9391978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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