View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_31 (Length: 340)
Name: NF11168_high_31
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 142 - 336
Target Start/End: Original strand, 9821130 - 9821324
Alignment:
| Q |
142 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
241 |
Q |
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| T |
9821130 |
atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
9821229 |
T |
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| Q |
242 |
aagtcaactagtaaagtaaaatactaaaaaatgatgtcaacaatcaaaagcagaacattacattaatactacatcctttctcacataaagttttg |
336 |
Q |
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| T |
9821230 |
aagtcaactagtaaagtaaactactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttg |
9821324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 9820378 - 9820513
Alignment:
| Q |
3 |
tggagaagcagagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggtt |
102 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9820378 |
tggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccaaaaagatcaacttaactcacagtaaagtaatgacagtatgggtt |
9820477 |
T |
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| Q |
103 |
caaaatgtatgtttcactaacaaatataaacttacc |
138 |
Q |
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| T |
9820478 |
caaaatgtatgtttcactaacaaatataaacttacc |
9820513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 38874021 - 38874145
Alignment:
| Q |
14 |
agataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatg |
113 |
Q |
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|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||| ||||||| |
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| T |
38874021 |
agataaaatgcaacaatgatctcagaatcatacgtatttctaccacaaagatcaactcaactcacaatgaagtaatgacagtataagttcaagatgtatg |
38874120 |
T |
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| Q |
114 |
tttcactaacaaatataaacttacc |
138 |
Q |
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||||||||| ||||||||||||||| |
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| T |
38874121 |
tttcactaagaaatataaacttacc |
38874145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 38875382 - 38875481
Alignment:
| Q |
142 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
241 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38875382 |
atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag |
38875478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 38875620 - 38875695
Alignment:
| Q |
263 |
tactaaaaaatgatgtcaacaatcaaaagcagaacattacattaatactacatcctttctcacataaagttttgta |
338 |
Q |
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||||||||| |||||||||||||||||| || |||| ||||||| ||||||||||| |||| |||||||||| |
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| T |
38875620 |
tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgta |
38875695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 38693718 - 38693599
Alignment:
| Q |
142 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
241 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| || |||| ||||||||||||||||| |
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| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag |
38693619 |
T |
|
| Q |
242 |
aa-gtcaactagtaaagtaa |
260 |
Q |
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|| | |||||||||||||| |
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| T |
38693618 |
aaggaaaactagtaaagtaa |
38693599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 38694179 - 38694151
Alignment:
| Q |
15 |
gataaaatgcaacaatgatcttagaatca |
43 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38694179 |
gataaaatgcaacaatgatcttagaatca |
38694151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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