View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_33 (Length: 338)
Name: NF11168_high_33
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 24471270 - 24471497
Alignment:
| Q |
7 |
ccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccagctattaagcttccggctatcatttgaaattttttcatt |
106 |
Q |
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| T |
24471270 |
ccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctatcatttgaaattttttcaat |
24471369 |
T |
|
| Q |
107 |
gaattatattcagcattgttgtggttaatttgtattcaagtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtactaattcataa |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24471370 |
gaattatattcagcattgttgtggttaatttgttttctagtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtgttaattcataa |
24471469 |
T |
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| Q |
207 |
gtttgtatttatttatctcctttagttg |
234 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
24471470 |
gtttgtgtttatttatctcctttagttg |
24471497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 24420350 - 24420212
Alignment:
| Q |
7 |
ccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccagctattaagcttccggctatcatttgaaattttttcatt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||| | |
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| T |
24420350 |
ccaccatctccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatctattaagcttccggctattatttgaaaaaatttcaat |
24420251 |
T |
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| Q |
107 |
gaattatattcagcattgttgtggttaatttgtattcaa |
145 |
Q |
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| T |
24420250 |
gaattatattcagcattgttgtggttaatttgtattcaa |
24420212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 24420180 - 24420091
Alignment:
| Q |
145 |
agtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtactaattcataagtttgtatttatttatctcctttagttg |
234 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
24420180 |
agtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttttctcctttagttg |
24420091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 24475991 - 24475856
Alignment:
| Q |
10 |
ccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccagctattaag-cttccggctatc---atttgaaattttttcat |
105 |
Q |
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|||||||||| ||||||||||| |||| || | ||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
24475991 |
ccatctccataacctcctccatctcattccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttgaaattttttcaa |
24475892 |
T |
|
| Q |
106 |
tgaattatattcagcattgttgtggttaatttgtat |
141 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
24475891 |
agaattatattcagcattgttctggttaatttgtat |
24475856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 24406377 - 24406239
Alignment:
| Q |
7 |
ccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccagctattaagcttccggctatcat---ttgaaattttttc |
103 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||| | || |||||| |||||| |||||||||| ||| ||| | ||||||||||||| |
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| T |
24406377 |
ccaccatctccttcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttgaaattttttc |
24406278 |
T |
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| Q |
104 |
attgaattatattcagcattgttgtggttaatttgtatt |
142 |
Q |
| |
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| |||||||| |||| ||||||||||||||||||||||| |
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|
| T |
24406277 |
aatgaattatgttcaacattgttgtggttaatttgtatt |
24406239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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