View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_high_5 (Length: 603)
Name: NF11168_high_5
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 213 - 407
Target Start/End: Complemental strand, 16825557 - 16825363
Alignment:
| Q |
213 |
tacctcttctcttagccttgcattttcaagcctcaaatgatgttcatcaaatgacatttcacctatagctgttggaccaccacaattaggacatgaagca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16825557 |
tacctcttctcttagccttgcattttcaagcctcaaatgatgttcatcaaatgacatttcacctatagctgttggaccaccacaattaggacatgaagca |
16825458 |
T |
|
| Q |
313 |
ttgctaagagcttctctatacctcatgttatcagctctaagcttttcattatctgctcttagctgagaattctccgaacgttcatgttgtgtctg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16825457 |
ttgctaagagcttctctatacctcatgttatcagctctaagcttttcattatctgctcttaactgagaattctccgaacgttcatgttgtgtctg |
16825363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 16825769 - 16825621
Alignment:
| Q |
1 |
agagaagctttctctctctaaatgtaatggttgttatggttgttgcaccatacagcggccgtaaaggatttgattatttaaccctaggtctatttaagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
16825769 |
agagaagctttctctctctaaatgtaatggttgttatggttgttgcaccatacagcggccgtagaggatatgattatttaaccctaagtctattgaagta |
16825670 |
T |
|
| Q |
101 |
gttgttttttagactgcttttataggcttgcacaagtagattttttgtt |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16825669 |
gttgttttttagactgcttttataggcttgcacaagtagattttttgtt |
16825621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 494 - 591
Target Start/End: Complemental strand, 16825279 - 16825182
Alignment:
| Q |
494 |
tagtatcataccttcatttgagtccttttgttttgaaaccaaaacttgacttgcaaaggctcaagccctaactctctgcttaactccttcctttgctt |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16825279 |
tagtatcataccttcatttgagtccttttgttttgaaaccaaaacttgacttgcaaaggctcaagccctaactctctgcttaactccttcctttgctt |
16825182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 37304445 - 37304558
Alignment:
| Q |
234 |
attttcaagcctcaaatgatgttcatcaaatgacatttcacctatagctgttggaccaccacaattaggacatgaagcattgctaagagcttctctatac |
333 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |||||||| || ||||| ||||| ||||||||||||||||| |||||||| || |||||||||||| || |
|
|
| T |
37304445 |
attttcaatcctcaagtgatgttcatcaaacgacatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaac |
37304544 |
T |
|
| Q |
334 |
ctcatgttatcagc |
347 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37304545 |
ctcatgttatcagc |
37304558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 591
Target Start/End: Original strand, 37304714 - 37304804
Alignment:
| Q |
501 |
ataccttcatttgagtccttttgttttgaaaccaaaacttgacttgcaaaggctcaagccctaactctctgcttaactccttcctttgctt |
591 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||| |||||||| ||||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
37304714 |
ataccttcatttgagtacgtttgttctgaaaccaaaacttcacttgcaatggctctaaccctaactctctgcttagttccttcctttgctt |
37304804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University