View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_high_50 (Length: 259)

Name: NF11168_high_50
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_high_50
NF11168_high_50
[»] scaffold0349 (3 HSPs)
scaffold0349 (1-249)||(14529-14777)
scaffold0349 (1-229)||(3596-3825)
scaffold0349 (87-229)||(8061-8204)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-229)||(13806-14035)
scaffold0277 (1-228)||(4845-5073)
[»] chr6 (55 HSPs)
chr6 (1-249)||(27698668-27698916)
chr6 (1-229)||(28780923-28781152)
chr6 (1-229)||(28786062-28786291)
chr6 (1-228)||(28792184-28792412)
chr6 (1-229)||(27725019-27725248)
chr6 (1-229)||(27611176-27611405)
chr6 (1-229)||(27718553-27718782)
chr6 (1-229)||(27229018-27229245)
chr6 (1-239)||(27604879-27605124)
chr6 (1-239)||(26802212-26802455)
chr6 (3-182)||(27593196-27593375)
chr6 (21-239)||(26655763-26655982)
chr6 (21-239)||(26761734-26761953)
chr6 (22-188)||(31284114-31284280)
chr6 (1-180)||(27678780-27678959)
chr6 (1-188)||(27338239-27338426)
chr6 (1-188)||(27398979-27399166)
chr6 (1-133)||(27531371-27531503)
chr6 (22-185)||(26622805-26622968)
chr6 (22-185)||(26728783-26728946)
chr6 (22-184)||(26861446-26861608)
chr6 (22-177)||(26884006-26884155)
chr6 (22-229)||(26823630-26823832)
chr6 (25-182)||(27677812-27677969)
chr6 (40-188)||(27427816-27427964)
chr6 (25-180)||(27706600-27706755)
chr6 (22-185)||(26646302-26646471)
chr6 (22-185)||(26752270-26752439)
chr6 (54-180)||(28098596-28098725)
chr6 (21-110)||(27665311-27665400)
chr6 (21-110)||(28234468-28234557)
chr6 (1-81)||(26055859-26055939)
chr6 (1-81)||(26075829-26075909)
chr6 (21-83)||(26635621-26635683)
chr6 (21-83)||(26741587-26741649)
chr6 (4-84)||(29825957-29826037)
chr6 (154-229)||(27531503-27531577)
chr6 (21-83)||(25071590-25071652)
chr6 (155-185)||(26055788-26055818)
chr6 (21-83)||(26974983-26975045)
chr6 (156-185)||(25481604-25481633)
chr6 (156-185)||(25538402-25538431)
chr6 (156-185)||(25579581-25579610)
chr6 (156-185)||(26048707-26048736)
chr6 (40-113)||(26048746-26048819)
chr6 (156-185)||(26069876-26069905)
chr6 (40-113)||(26069915-26069988)
chr6 (156-185)||(26075758-26075787)
chr6 (156-185)||(26142727-26142756)
chr6 (21-82)||(26959097-26959158)
chr6 (21-110)||(27214321-27214410)
chr6 (21-110)||(27234818-27234907)
chr6 (21-110)||(28242708-28242797)
chr6 (1-81)||(25481675-25481755)
chr6 (1-81)||(25579652-25579732)
[»] scaffold1254 (1 HSPs)
scaffold1254 (1-188)||(91-278)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-188)||(7351-7538)
[»] chr4 (8 HSPs)
chr4 (21-226)||(18699581-18699787)
chr4 (21-226)||(18655658-18655864)
chr4 (21-226)||(18679748-18679954)
chr4 (21-187)||(18724266-18724432)
chr4 (21-226)||(18731685-18731891)
chr4 (40-188)||(17989250-17989398)
chr4 (40-188)||(18073591-18073739)
chr4 (21-116)||(5091148-5091243)
[»] chr8 (2 HSPs)
chr8 (22-180)||(29273965-29274123)
chr8 (3-95)||(31903770-31903862)
[»] scaffold0003 (1 HSPs)
scaffold0003 (40-188)||(59399-59547)
[»] chr1 (3 HSPs)
chr1 (22-187)||(268539-268704)
chr1 (22-185)||(28127862-28128019)
chr1 (22-185)||(28164544-28164707)
[»] scaffold0038 (2 HSPs)
scaffold0038 (21-110)||(34629-34718)
scaffold0038 (21-110)||(42870-42959)
[»] chr2 (1 HSPs)
chr2 (64-110)||(3279592-3279638)
[»] scaffold0019 (1 HSPs)
scaffold0019 (21-96)||(58476-58551)


Alignment Details
Target: scaffold0349 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 14529 - 14777
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14529 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgc 14628  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagaggga-ctgatgat 199  Q
    ||||||||||||  || ||||||||||||||| ||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||  |   |||||     
T  14629 ccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatga- 14727  T
Q  200 aaaagagtttaagaatgcagaatatgaatgcctaagttttgtgatctgtg 249  Q
    |||||||||| |||||||||||||||||||  ||| ||||||| ||||||    
T  14728 aaaagagtttgagaatgcagaatatgaatgagtaaattttgtgttctgtg 14777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3596 - 3825
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3596 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgc 3695  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagaggga-ctgatgat 199  Q
    |||||||||| || || ||||||||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||| |||||||||  |   |||||     
T  3696 ccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaa 3795  T
Q  200 aaaagagtttaagaatgcagaatatgaatg 229  Q
    |||||||||| |||||||||||||||||||    
T  3796 aaaagagtttgagaatgcagaatatgaatg 3825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 8061 - 8204
Alignment:
Q  87 ccgagtgtcagtgcccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgag 186  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| ||| ||| ||||||| ||  |||||||||||||| ||||||||||||||||||    
T  8061 ccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgag 8160  T
Q  187 aggga-ctgatgataaaagagtttaagaatgcagaatatgaatg 229  Q
    ||  |   ||||| |||||||||| |||||||||||||||||||    
T  8161 agaaataggatgaaaaaagagtttgagaatgcagaatatgaatg 8204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 13806 - 14035
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  13806 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgc 13905  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgat 199  Q
    ||||||||||||| || |||||||||||||||||| |||||||||||| || |||||||||| ||||||||||||||| |||||||||  | | |||||     
T  13906 ccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaa 14005  T
Q  200 aaaagagtttaagaatgcagaatatgaatg 229  Q
    |||||||||| ||||| |||||||||||||    
T  14006 aaaagagtttgagaattcagaatatgaatg 14035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4845 - 5073
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||    
T  4845 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgc 4944  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgat 199  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||| ||  |||||||||||||| |||||||| |||||||||||  | | |||||     
T  4945 ccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaa 5044  T
Q  200 aaaagagtttaagaatgcagaatatgaat 228  Q
    |||||||||| ||||| ||||||||||||    
T  5045 aaaagagtttgagaattcagaatatgaat 5073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 55)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 27698668 - 27698916
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27698668 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgc 27698767  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagaggga-ctgatgat 199  Q
    ||||||||||||  || ||||||||||||||| ||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||  |   |||||     
T  27698768 ccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatga- 27698866  T
Q  200 aaaagagtttaagaatgcagaatatgaatgcctaagttttgtgatctgtg 249  Q
    |||||||||| |||||||||||||||||||  ||| ||||||| ||||||    
T  27698867 aaaagagtttgagaatgcagaatatgaatgagtaaattttgtgttctgtg 27698916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28781152 - 28780923
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  28781152 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgc 28781053  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgat 199  Q
    ||||||||||||| || |||||||||||||||||| |||||||||||| || |||||||||| ||||||||||||||| |||||||||  | | |||||     
T  28781052 ccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaa 28780953  T
Q  200 aaaagagtttaagaatgcagaatatgaatg 229  Q
    |||||||||| ||||| |||||||||||||    
T  28780952 aaaagagtttgagaattcagaatatgaatg 28780923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28786291 - 28786062
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  28786291 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgc 28786192  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgat 199  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||| ||  |||||||||||||| |||||||| |||||||||||  | | |||||     
T  28786191 ccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaa 28786092  T
Q  200 aaaagagtttaagaatgcagaatatgaatg 229  Q
    |||||||||| ||||| |||||||||||||    
T  28786091 aaaagagtttgagaattcagaatatgaatg 28786062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 28792412 - 28792184
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  28792412 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgc 28792313  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgat 199  Q
    ||||||||||||| || ||||||||||||||| ||||||||||||||| ||  |||||||||||||| |||||||| |||||||||||  | | |||||     
T  28792312 ccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaa 28792213  T
Q  200 aaaagagtttaagaatgcagaatatgaat 228  Q
    |||||||||| ||||| ||||||||||||    
T  28792212 aaaagagtttgagaattcagaatatgaat 28792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27725019 - 27725248
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27725019 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgc 27725118  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagaggga-ctgatgat 199  Q
    |||||||||| || || ||||||||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||| |||||||||  |   |||||     
T  27725119 ccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaa 27725218  T
Q  200 aaaagagtttaagaatgcagaatatgaatg 229  Q
    |||||||||| |||||||||||||||||||    
T  27725219 aaaagagtttgagaatgcagaatatgaatg 27725248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27611176 - 27611405
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||| ||||| | | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  27611176 tctcctcttggaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgc 27611275  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgat 199  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||  | |||||||| | ||||||||||||||| |||||||||  | | |||||     
T  27611276 ccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaagaagaggaagctaattgcatagccatgaaaattgagagaaattggatgaa 27611375  T
Q  200 aaaagagtttaagaatgcagaatatgaatg 229  Q
    |||||||||| |||||||||||||||||||    
T  27611376 aaaagagtttgagaatgcagaatatgaatg 27611405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27718553 - 27718782
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  27718553 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgc 27718652  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagaggga-ctgatgat 199  Q
    ||||||||||||| || ||||||||||||||| ||| ||| ||||||| ||  |||||||||||||| ||||||||||||||||||||  |   |||||     
T  27718653 ccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaa 27718752  T
Q  200 aaaagagtttaagaatgcagaatatgaatg 229  Q
    |||||||||| |||||||||||||||||||    
T  27718753 aaaagagtttgagaatgcagaatatgaatg 27718782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27229245 - 27229018
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  27229245 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgc 27229146  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgat 199  Q
    |||||||||| || || ||||||||||||||| || |||||||||||| || ||||||||||||||| |||||||||||| |||||||  | | ||||      
T  27229145 ccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtatagccatgagacttgagagaaattggatg-- 27229048  T
Q  200 aaaagagtttaagaatgcagaatatgaatg 229  Q
    |||||||||| |||||||||||||||||||    
T  27229047 aaaagagttttagaatgcagaatatgaatg 27229018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27604879 - 27605124
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||| ||||| | |  |||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||    
T  27604879 tctcctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgc 27604978  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaa------ggggcagaggaaggtgattgcatagccatgagaattgagagggact- 193  Q
    |||||||||| || || ||||||||||||||||||||||||||||||      | ||  ||||||||| |||||||||||||||||||||||||  | |     
T  27604979 ccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattg 27605078  T
Q  194 gatgataaaagagtttaagaatgcagaatatgaatgcctaagtttt 239  Q
    ||||| |||||||||| |||||||||||||||||||  ||||||||    
T  27605079 gatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttt 27605124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26802455 - 26802212
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| | ||||||||||||| ||||||||||||||||||| || |||||||| | ||||||||||||||    
T  26802455 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgc 26802356  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatg-- 197  Q
    ||||||||||||| || ||||||||||||||| |||| |||||||||| ||  |||||||| || ||||||||||||| ||||| |||  | | ||||      
T  26802355 ccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggatgaa 26802256  T
Q  198 --ataaaagagtttaagaatgcagaatatgaatgcctaagtttt 239  Q
      | |||||||||| |||||||||||||||||||  ||||||||    
T  26802255 aaaaaaaagagtttgagaatgcagaatatgaatgagtaagtttt 26802212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 27593196 - 27593375
Alignment:
Q  3 tcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgccc 102  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||| | ||     
T  27593196 tcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcct 27593295  T
Q  103 ctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaat 182  Q
    || |||||||| |||||||||||  || |  ||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  27593296 ctgaaactgaggaatacttggtatttgtaatcataggaaattgaagtggaagaggaaggtgattgcatagccatgagaat 27593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 26655982 - 26655763
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatact 120  Q
    |||||||||||| || | ||||||||| ||| ||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||| || |||    
T  26655982 gtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacact 26655883  T
Q  121 tggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgataaaagagtttaagaatgcag 219  Q
    |||||  | ||  ||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||  | | ||||| ||||||||||  ||||||||    
T  26655882 tggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcag 26655783  T
Q  220 aatatgaatgcctaagtttt 239  Q
    ||||||||||  ||||||||    
T  26655782 aatatgaatgagtaagtttt 26655763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 26761953 - 26761734
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatact 120  Q
    |||||||||||| || | ||||||||| ||| ||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||| || |||    
T  26761953 gtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacact 26761854  T
Q  121 tggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgataaaagagtttaagaatgcag 219  Q
    |||||  | ||  ||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||  | | ||||| ||||||||||  ||||||||    
T  26761853 tggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcag 26761754  T
Q  220 aatatgaatgcctaagtttt 239  Q
    ||||||||||  ||||||||    
T  26761753 aatatgaatgagtaagtttt 26761734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 31284280 - 31284114
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| | ||||| ||||| || |||||||    
T  31284280 tcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaatactt 31284181  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    ||||  ||||| ||||||||| ||||| || |||||||| ||||||||||||||||||| |||||||    
T  31284180 ggtatttgaatacataggaaattgaagaggaagaggaagatgattgcatagccatgagatttgagag 31284114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 27678959 - 27678780
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||| | |    
T  27678959 tctcctctttgaagaccattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttc 27678860  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgaga 180  Q
    | || |||||||| |||||||||||  || |  ||||||||| ||||| || ||||||||||||||||||||||||||||    
T  27678859 ctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgaga 27678780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 27338239 - 27338426
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    |||||||||| |||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |   |||||||| ||     
T  27338239 tctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgt 27338338  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    ||||||||||||| || || |||||  ||||  || |||||| ||||| || ||||||| ||||||||||||||||||||||||||||    
T  27338339 ccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagag 27338426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 27398979 - 27399166
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    |||||||||| |||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |   |||||||| ||     
T  27398979 tctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgt 27399078  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    ||||||||||||| || || |||||  ||||  || |||||| ||||| || ||||||| ||||||||||||||||||||||||||||    
T  27399079 ccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagag 27399166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 27531371 - 27531503
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||    
T  27531371 tctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtccgcgc 27531470  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatg 133  Q
    ||||||||||||| || ||||||||||||||||    
T  27531471 ccctaaaactgaggaacacttggtaagtgaatg 27531503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 26622968 - 26622805
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| | |||||||||| |||| || ||||| || || ||||    
T  26622968 tcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacactt 26622869  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattga 185  Q
    ||||  |||||  |||||||| ||||| || |||||| ||||||||||||||||||| ||||||    
T  26622868 ggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatgataattga 26622805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 26728946 - 26728783
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| | |||||||||| |||| || ||||| || || ||||    
T  26728946 tcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacactt 26728847  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattga 185  Q
    ||||  |||||  |||||||| ||||| || |||||| ||||||||||||||||||| ||||||    
T  26728846 ggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatgataattga 26728783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 26861608 - 26861446
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | || || |||||||| ||||| |    
T  26861608 tcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacct 26861509  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattg 184  Q
    ||||  ||||| |||||||||  |||| || |||| ||||||||||||||||||| |||||||    
T  26861508 ggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattg 26861446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 26884155 - 26884006
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||| |||||||||| | || || |||||||| || ||||    
T  26884155 tcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacactt 26884056  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatg 177  Q
    ||||||||||| |||||||||||||      |||||||||||||||||| ||||||    
T  26884055 ggtaagtgaatccataggaaaatga------agaggaaggtgattgcattgccatg 26884006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 26823832 - 26823630
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    |||||||  ||||||| |||||||||||| |||||||||||||||||||| ||||||||  ||| ||||||||||| ||| |||||||||||||| ||||    
T  26823832 tcatcaaaaaaggtgtggattcccttgtctgtaagagccttgtagagattgccggtaaattcataccgagtgtcagcgcctctaaaactgagaaacactt 26823733  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgataaaagagtttaagaatgcaga 220  Q
    ||||  ||||  |||| |||| |||      |||||||| ||| |||||||||||||||||||||||  | | || ||  ||||||||| ||||||||||    
T  26823732 ggtatttgaaatcatatgaaactga------agaggaagttgactgcatagccatgagaattgagagaaattggacgaagaaagagtttgagaatgcaga 26823639  T
Q  221 atatgaatg 229  Q
    |||||||||    
T  26823638 atatgaatg 26823630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 27677812 - 27677969
Alignment:
Q  25 tcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatacttggt 124  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||| ||||| ||||| | |||||||||| | || || ||| |||| ||||||||||    
T  27677812 tcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaattgaggaatacttggt 27677911  T
Q  125 aagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaat 182  Q
    |  || |  ||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  27677912 atttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgagaat 27677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 27427816 - 27427964
Alignment:
Q  40 attcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatacttggtaagtgaatgcatagg 139  Q
    |||||||||||| ||||||||||  ||||||| ||||| ||||| | ||||||||| |||||| || || |||| || || | |||| ||||||||||||    
T  27427816 attcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcatagg 27427915  T
Q  140 aaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    ||||||||| || | || ||||| ||||||| |||||||||||||||||    
T  27427916 aaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagag 27427964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 27706600 - 27706755
Alignment:
Q  25 tcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatacttggt 124  Q
    ||||||||||||| |||||||||||||  || ||||||||||||||| || || ||||| | ||||||||||   || || |||||||| ||||||||||    
T  27706600 tcaatgaaggtgtggattcccttgtcatcaaaagccttgtagagattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaatacttggt 27706699  T
Q  125 aagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgaga 180  Q
    |  || |  ||||||||| ||||| || |||| |||||||||||||||||||||||    
T  27706700 atttgtactcataggaaattgaagtggaagagaaaggtgattgcatagccatgaga 27706755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 26646471 - 26646302
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||| |||||||| |  ||||||||| ||||||| ||  |||| || || |    
T  26646471 tcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacct 26646372  T
Q  122 ggtaagtgaatgcataggaaa------atgaaggggcagaggaaggtgattgcatagccatgagaattga 185  Q
    |||| |||||| | |||||||      | |||| || | ||||||| |||||||||||||||||||||||    
T  26646371 ggtaggtgaatccgtaggaaattaaagaggaagaggaataggaaggagattgcatagccatgagaattga 26646302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 26752439 - 26752270
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||| |||||||| |  ||||||||| ||||||| ||  |||| || || |    
T  26752439 tcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacct 26752340  T
Q  122 ggtaagtgaatgcataggaaa------atgaaggggcagaggaaggtgattgcatagccatgagaattga 185  Q
    |||| |||||| | |||||||      | |||| || | ||||||| |||||||||||||||||||||||    
T  26752339 ggtaggtgaatccgtaggaaattaaagaggaagaggaataggaaggagattgcatagccatgagaattga 26752270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 28098596 - 28098725
Alignment:
Q  54 aagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggca 153  Q
    |||||| |||||||||||||| |||||||||| ||||||||| |||||||||||| | ||||| || |  || |||||| |||| || ||||||| |  |    
T  28098596 aagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcataggtgaatccataagagaatgaagagaaa 28098695  T
Q  154 gaggaaggtgatt---gcatagccatgaga 180  Q
    ||||||| |||||   ||||||||||||||    
T  28098696 gaggaagatgattggagcatagccatgaga 28098725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 27665311 - 27665400
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaact 110  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| ||||| || ||||| ||||||   |||||||| || ||||| |||||    
T  27665311 gtcatcaatgaaggtgtggattcctttgtcagaaagagccttatagaggttaccggtgaaaccaaatcgagtgtcggtacccctgaaact 27665400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 28234557 - 28234468
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaact 110  Q
    ||||||||||||||||| ||||||||||| |  ||||||  | ||||||||| ||||||||||||  ||||||||| | || ||||||||    
T  28234557 gtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcactacctctaaaact 28234468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 26055939 - 26055859
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaa 81  Q
    ||||||||||||||| | |  ||||||||||| || || ||||||||||||  ||||||||| |||||||| |||||||||    
T  26055939 tctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 26075909 - 26075829
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaa 81  Q
    ||||||||||||||| | |  ||||||||||| || || ||||||||||||  ||||||||| |||||||| |||||||||    
T  26075909 tctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26075829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 26635683 - 26635621
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaacc 83  Q
    |||||||||||||||||||||||| ||||||| |||||| || ||||| || ||||| |||||    
T  26635683 gtcatcaatgaaggtgttgattcctttgtcagaaagagctttatagaggttaccggtgaaacc 26635621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 26741649 - 26741587
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaacc 83  Q
    |||||||||||||||||||||||| ||||||| |||||| || ||||| || ||||| |||||    
T  26741649 gtcatcaatgaaggtgttgattcctttgtcagaaagagctttatagaggttaccggtgaaacc 26741587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 29826037 - 29825957
Alignment:
Q  4 cctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaacca 84  Q
    |||||||||||  | | ||||||||||||||||   |||  ||||||||| ||||| ||||||||||| ||||||||||||    
T  29826037 cctctttgaagctctttgtcatcaatgaaggtgcgaattttcttgtcagttagagctttgtagagattgccggtaaaacca 29825957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 27531503 - 27531577
Alignment:
Q  154 gaggaaggtgattgcatagccatgagaattgagagggactgatgataaaagagtttaagaatgcagaatatgaatg 229  Q
    ||||||||||||||| |||||||||||| ||||||  ||| ||||  || |||||| |||||||||||| ||||||    
T  27531503 gaggaaggtgattgcgtagccatgagaactgagagaaacttatga-caaggagtttgagaatgcagaatgtgaatg 27531577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 25071652 - 25071590
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaacc 83  Q
    ||||||||| ||||||| |||||| ||||||| |||||| || || ||||| |||||||||||    
T  25071652 gtcatcaataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaaacc 25071590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 26055818 - 26055788
Alignment:
Q  155 aggaaggtgattgcatagccatgagaattga 185  Q
    |||||||||||||||||||||||||||||||    
T  26055818 aggaaggtgattgcatagccatgagaattga 26055788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 26975045 - 26974983
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaacc 83  Q
    ||||||||||||| |||||||||| ||||||| |||||| || ||||| || ||||| |||||    
T  26975045 gtcatcaatgaagatgttgattcctttgtcagaaagagctttatagaggttaccggtgaaacc 26974983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 25481633 - 25481604
Alignment:
Q  156 ggaaggtgattgcatagccatgagaattga 185  Q
    ||||||||||||||||||||||||||||||    
T  25481633 ggaaggtgattgcatagccatgagaattga 25481604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 25538431 - 25538402
Alignment:
Q  156 ggaaggtgattgcatagccatgagaattga 185  Q
    ||||||||||||||||||||||||||||||    
T  25538431 ggaaggtgattgcatagccatgagaattga 25538402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 25579610 - 25579581
Alignment:
Q  156 ggaaggtgattgcatagccatgagaattga 185  Q
    ||||||||||||||||||||||||||||||    
T  25579610 ggaaggtgattgcatagccatgagaattga 25579581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 26048736 - 26048707
Alignment:
Q  156 ggaaggtgattgcatagccatgagaattga 185  Q
    ||||||||||||||||||||||||||||||    
T  26048736 ggaaggtgattgcatagccatgagaattga 26048707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 26048819 - 26048746
Alignment:
Q  40 attcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgag 113  Q
    |||||||||||| | |||||||| |||||||| |||||||||   |  ||||||||| ||||||| ||||||||    
T  26048819 attcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaactgag 26048746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 26069905 - 26069876
Alignment:
Q  156 ggaaggtgattgcatagccatgagaattga 185  Q
    ||||||||||||||||||||||||||||||    
T  26069905 ggaaggtgattgcatagccatgagaattga 26069876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 26069988 - 26069915
Alignment:
Q  40 attcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgag 113  Q
    |||||||||||| | |||||||| |||||||| |||||||||   |  ||||||||| ||||||| ||||||||    
T  26069988 attcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaactgag 26069915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 26075787 - 26075758
Alignment:
Q  156 ggaaggtgattgcatagccatgagaattga 185  Q
    ||||||||||||||||||||||||||||||    
T  26075787 ggaaggtgattgcatagccatgagaattga 26075758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 26142756 - 26142727
Alignment:
Q  156 ggaaggtgattgcatagccatgagaattga 185  Q
    ||||||||||||||||||||||||||||||    
T  26142756 ggaaggtgattgcatagccatgagaattga 26142727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 26959158 - 26959097
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaac 82  Q
    ||||||||||||||||| |||||| ||||||| |||||| || ||||| || ||||| ||||    
T  26959158 gtcatcaatgaaggtgtcgattcctttgtcagaaagagctttatagaggttaccggtgaaac 26959097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 27214410 - 27214321
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaact 110  Q
    |||||||||||||||   |||||| ||||||  |||||| || |||||||| ||||| ||||| || |||||||| || ||||| |||||    
T  27214410 gtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgtcggtacccctgaaact 27214321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 27234818 - 27234907
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaact 110  Q
    |||||||||||||||   |||||| ||||||  |||||| || |||||||| ||||| ||||| || |||||||| || ||||| |||||    
T  27234818 gtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgtcggtacccctgaaact 27234907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 28242797 - 28242708
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaact 110  Q
    ||||||||||||||||   |||||||| | |  |||| | |||||||||||||| ||||||||||  ||||||||| | || ||||||||    
T  28242797 gtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaact 28242708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25481755 - 25481675
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaa 81  Q
    ||||||||||||||| | |  ||||||||||| ||    ||||||||||||  ||||||||| |||||||| |||||||||    
T  25481755 tctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaaa 25481675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25579732 - 25579652
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaa 81  Q
    ||||||||||||||| | |  ||||||| ||||||    ||||||||||||  ||||||||| |||||||| |||||||||    
T  25579732 tctcctctttgaagatcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggtaaaa 25579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 91 - 278
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  91 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgc 190  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    |||||||||| || || |||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  191 ccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagag 278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 7538 - 7351
Alignment:
Q  1 tctcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgc 100  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||    
T  7538 tctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgc 7439  T
Q  101 ccctaaaactgagaaatacttggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    |||||||||| || || |||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  7438 ccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagag 7351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 18699581 - 18699787
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatact 120  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||  || |||||||| |  ||||||||||||||||| || ||||| || |||    
T  18699581 gtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacact 18699680  T
Q  121 tggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgataaaagagtttaagaatgcag 219  Q
    ||||||||||||  |||||||||||||| ||  |||||||||||||||||||||||||||||||||||  ||| ||||| |||||||||| |||||||||    
T  18699681 tggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgagagaaactagatgaaaaaagagtttgagaatgcag 18699780  T
Q  220 aatatga 226  Q
    |||||||    
T  18699781 aatatga 18699787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 18655658 - 18655864
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatact 120  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||  || |||||||| |  ||||||||| ||||||| || ||||| || |||    
T  18655658 gtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 18655757  T
Q  121 tggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgataaaagagtttaagaatgcag 219  Q
    ||||||||||||  |||||||||||||| ||  ||||||||||||||| ||||||||| |||||||||  ||| ||||| |||||||||| |||||||||    
T  18655758 tggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagccatgaaaattgagagaaactggatgaaaaaagagtttgagaatgcag 18655857  T
Q  220 aatatga 226  Q
    |||||||    
T  18655858 aatatga 18655864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 18679748 - 18679954
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatact 120  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||  || |||||||| |  ||||||||| ||||||| || ||||| || |||    
T  18679748 gtcatcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 18679847  T
Q  121 tggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgataaaagagtttaagaatgcag 219  Q
    ||||||||||||  |||||||||||||| |   ||||||||||||||||||||||||| ||| |||||  ||| ||||| |||||||||| |||||||||    
T  18679848 tggtaagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagccatgaaaatagagagaaactggatgaaaaaagagtttgagaatgcag 18679947  T
Q  220 aatatga 226  Q
    |||||||    
T  18679948 aatatga 18679954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 18724266 - 18724432
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatact 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||||| |  ||||||||| ||||||| || ||||| || |||    
T  18724266 gtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 18724365  T
Q  121 tggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgaga 187  Q
    ||||||||||||  |||||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  18724366 tggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgaga 18724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 18731685 - 18731891
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatact 120  Q
    ||||||||||||||||| |||||||||||||||||||||  |||||||||  || |||||||| |  ||||||||| ||||||| || ||||| || |||    
T  18731685 gtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacact 18731784  T
Q  121 tggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagagggact-gatgataaaagagtttaagaatgcag 219  Q
    ||||||||||||  |||||||||||||| ||  ||||||||||||||||||||||||| ||| |||||  ||| ||||| |||||||||| |||||||||    
T  18731785 tggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgaaaatcgagagaaactggatgaaaaaagagtttgagaatgcag 18731884  T
Q  220 aatatga 226  Q
    |||||||    
T  18731885 aatatga 18731891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 17989250 - 17989398
Alignment:
Q  40 attcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatacttggtaagtgaatgcatagg 139  Q
    |||||||||||| ||||||||||  ||||||| ||||| ||||| | ||||||||| |||||| || || |||| || || | |||| ||||||||||||    
T  17989250 attcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcatagg 17989349  T
Q  140 aaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    ||||||||| || | || ||||| ||||||| |||||||||||||||||    
T  17989350 aaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagag 17989398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 18073739 - 18073591
Alignment:
Q  40 attcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatacttggtaagtgaatgcatagg 139  Q
    |||||||||||| ||||||||||  ||||||| ||||| ||||| | ||||||||| |||||| || || |||| || || | |||| ||||||||||||    
T  18073739 attcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcatagg 18073640  T
Q  140 aaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    ||||||||| || | || ||||| ||||||| |||||||||||||||||    
T  18073639 aaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagag 18073591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 5091148 - 5091243
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaa 116  Q
    |||||||||||||||||  ||||||||| ||   ||||| |  ||||||||||| |||||||| |  |||||||| ||||| |||||||| |||||    
T  5091148 gtcatcaatgaaggtgtgaattcccttgacacgtagagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctctaaaactaagaaa 5091243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 29273965 - 29274123
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||  ||  ||||||| |  |||||||||  ||| |||||  |||| || || |    
T  29273965 tcatcaatgaaggtgtggattcccttgtcagtaagagtcttgtagagatggccaataaaaccgtcacgagtgtcaccgcctctaaagttgaggaagacct 29274064  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgaga 180  Q
    ||||||||||| |||| || | ||||| || ||||||||||||||||||||||||||||    
T  29274065 ggtaagtgaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgaga 29274123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 31903862 - 31903770
Alignment:
Q  3 tcctctttgaagaccgtcgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtc 95  Q
    ||||||||||||  | || || ||||| ||||||| ||||||||| |||  |||||| |||||||||||||| ||||||||||  ||||||||    
T  31903862 tcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataaagagctttgtagagatttccagtaaaaccatagcgagtgtc 31903770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 59547 - 59399
Alignment:
Q  40 attcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatacttggtaagtgaatgcatagg 139  Q
    |||||||||||| ||||||||||  ||||||| ||||| ||||| | ||||||||| |||||| || || |||| || || | |||| ||||||||||||    
T  59547 attcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcatagg 59448  T
Q  140 aaaatgaaggggcagaggaaggtgattgcatagccatgagaattgagag 188  Q
    ||||||||| || | || ||||| ||||||| |||||||||||||||||    
T  59447 aaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagag 59399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 268539 - 268704
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  ||  ||||||| |  |||||||||  ||| || ||  |||| || || |    
T  268539 tcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccaataaaaccctcacgagtgtcaccgcctctgaagttgaggaagacct 268638  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattgaga 187  Q
    |||| |  ||| |||| || | ||||| || ||||||||||||||||||||||||||||| |||||    
T  268639 ggtaggcaaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaactgaga 268704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 28127862 - 28128019
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    ||||||||||| |||| |||||||||||||  ||| |||||||||||||  || || ||||| |  ||||||||| ||||||| || ||||| || ||||    
T  28127862 tcatcaatgaatgtgtggattcccttgtcataaagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacactt 28127961  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattga 185  Q
    |||| |||||| ||||||||| |||      ||||||| |||||||||||||||||||||||||    
T  28127962 ggtatgtgaatccataggaaattga------agaggaatgtgattgcatagccatgagaattga 28128019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 28164544 - 28164707
Alignment:
Q  22 tcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaactgagaaatactt 121  Q
    ||||||||||| ||||  |||||||||||   ||| ||||| |||||||  || || ||||| |  ||||||||| |||||||||||||||| || ||||    
T  28164544 tcatcaatgaatgtgtgaattcccttgtcgtcaagggccttatagagatggccagtgaaaccgtcacgagtgtcactgcccctaaaactgaggaacactt 28164643  T
Q  122 ggtaagtgaatgcataggaaaatgaaggggcagaggaaggtgattgcatagccatgagaattga 185  Q
    |||| |||||| ||||||||| ||||| || ||||||| | ||| | |||||||||||||||||    
T  28164644 ggtatgtgaatccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattga 28164707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 34718 - 34629
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaact 110  Q
    ||||||||||||||||| ||||||||||| |  ||||||  | ||||||||| ||||||||||||  ||||||||| | || ||||||||    
T  34718 gtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcactacctctaaaact 34629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 42959 - 42870
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaact 110  Q
    ||||||||||||||||   |||||||| | |  |||| | |||||||||||||| ||||||||||  ||||||||| | || ||||||||    
T  42959 gtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaact 42870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 3279638 - 3279592
Alignment:
Q  64 tagagatttccggtaaaaccatgccgagtgtcagtgcccctaaaact 110  Q
    ||||||||||| ||||||||||  |||||||||||||||||||||||    
T  3279638 tagagatttccagtaaaaccatagcgagtgtcagtgcccctaaaact 3279592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 58476 - 58551
Alignment:
Q  21 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccatgccgagtgtca 96  Q
    |||||| ||||||||   |||||||||||||  ||||||  ||||||||||||| ||||||||||  |||||||||    
T  58476 gtcatccatgaaggttcggattcccttgtcacaaagagctctgtagagatttccagtaaaaccatagcgagtgtca 58551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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