View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_52 (Length: 253)
Name: NF11168_high_52
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36904735 - 36904506
Alignment:
| Q |
1 |
gacgccaacacgttcttatataacactttttcctccatgcctatttctcctcacatattaaaacaaatcctgcttgagattggaaaatatgctaaggaga |
100 |
Q |
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| T |
36904735 |
gacgccaacacgttattatataacactttttcctccatgcctatttctcctcacatattaaaacaaatcctgcttgagattggaaaatatgctaaggaga |
36904636 |
T |
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| Q |
101 |
tgatcgcaagtaacgatgatagttgggggatgaatgcgaagctttttgtctatacatggtatattgaagatgaagatgctgtgaaagctgtacttgctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36904635 |
tgatcgcaagtaacgatgatagttgggggatgaatgcgaagctttttgtctatacatggtatattgaagatgaagatgctgtgaaagctgtacttgctat |
36904536 |
T |
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| Q |
201 |
ggatgatttgaaaaaggttggaatggatca |
230 |
Q |
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| T |
36904535 |
ggatgatttgaaaaaggttggaatggatca |
36904506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37073040 - 37073263
Alignment:
| Q |
1 |
gacgccaacacgttcttatataacactttttcctccatgcctatttctcctcacatattaaaacaaatcctgcttgagattggaaaatatgctaaggaga |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37073040 |
gacgccaacacgttcttatattacactttttcctccatgcctatttctcctcacatattaaaacaaatcctgcttgagattggaaaatatgctaaagaga |
37073139 |
T |
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| Q |
101 |
tgatcgcaagtaacgatgatagttgggggatgaatgcgaagctttttgtctatacatggtatattgaagatgaagatgctgtgaaagctgtacttgctgt |
200 |
Q |
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| T |
37073140 |
tggtcgcaa------ataataggtgggagatagatgtgacactttatgtctatacatggtatattgaagatgaagatgctgtgaaagctgtacttgctgt |
37073233 |
T |
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| Q |
201 |
ggatgatttgaaaaaggttggaatggatca |
230 |
Q |
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| T |
37073234 |
ggatgatttgaaaaaggttggaatggatca |
37073263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 37493731 - 37493545
Alignment:
| Q |
4 |
gccaacacgttcttatataacactttttcctccatgcctatttctcctcacatattaaaacaaatcctg-cttgagattggaaaatatgctaaggagatg |
102 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| | || |||||||||||||||||||||||| |
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| T |
37493731 |
gccaacactttcttatattacactttttcctccatgcctatttctcctgacatattaaaacaaattctgtcaagatattggaaaatatgctaaggagatg |
37493632 |
T |
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| Q |
103 |
atcgcaagtaacgatg---------atagttgggggatgaatgcgaagctttttgtctatacatggtatattgaagatgaagatgct |
180 |
Q |
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| T |
37493631 |
gtcgcaaacaacaatgaaggtcataataggtgggagatagatgtgacgctttctgtctatacatggtatattgaagctgaagatgct |
37493545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 37076948 - 37077025
Alignment:
| Q |
156 |
atggtatattgaagatgaagatgctgtgaaagctgtacttgctgtggatgatttgaaaaaggttggaatggatcactc |
233 |
Q |
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| T |
37076948 |
atggtatattgaagatgatgatgctgtgaaagccgtacttgttttggatgatttgaaaaaggttggaatggatcactc |
37077025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 37076835 - 37076913
Alignment:
| Q |
41 |
ctatttctcctcacatattaaaacaaatcctgcttgagattggaaaatatgctaaggagatgatcgcaagtaacgatga |
119 |
Q |
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| T |
37076835 |
ctatttatcctgacatattaaaacaaatcctgcccgatattggaaaacatgctaaggagatagtcgcaaataacgatga |
37076913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 41371623 - 41371548
Alignment:
| Q |
153 |
tacatggtatattgaagatgaagatgctgtgaaagctgtacttgctgtggatgatttgaaaaaggttggaatggat |
228 |
Q |
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| T |
41371623 |
tacatggtatgttgaagataatgatgttgtgaaagccatacttgttgtggataggttgaaaaaggttggaatggat |
41371548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 41371775 - 41371681
Alignment:
| Q |
13 |
ttcttatataacactttttcctccatgcctatttctcctcacatattaaaacaaatcctgcttgagattggaaaatatgctaaggagatgatcgc |
107 |
Q |
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| T |
41371775 |
ttcttacatgactctttttcctctgtgcctatttcttctcacatattaaaagaaatattgcccgagattggtgaatatgctagggagatggtcgc |
41371681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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