View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_58 (Length: 250)
Name: NF11168_high_58
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_58 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 38712739 - 38712979
Alignment:
| Q |
11 |
cataggctagatacaaaatgaaaactataaaagagtggctaattgagcttagatgcagctataatctcaacacataatgcacaataaacataatatttta |
110 |
Q |
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| T |
38712739 |
cataggctagatacaaaatgaaaactataaaagagtggctaattgagcttagatgcagctataatctcaacacataatgcacaataaacataatatttta |
38712838 |
T |
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| Q |
111 |
aaagtaaaattaatatttaatcact-gccattacttgccttatggaaccatcaataagatacctagctaattatttcagaaatttaatcgaagctagaaa |
209 |
Q |
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| T |
38712839 |
aaagtaaaattaatattcaatcactggccattacttgccttatggaaccatcaataagatacctagctaattatttcagaaatttaatcgaagctagaaa |
38712938 |
T |
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| Q |
210 |
taatttaattgtcagagccatgacaaacattaaacaatgtc |
250 |
Q |
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| T |
38712939 |
taatttaattgtcagagccatgacaaacattaaacaatgtc |
38712979 |
T |
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