View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_62 (Length: 245)
Name: NF11168_high_62
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_62 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 9821601 - 9821374
Alignment:
| Q |
18 |
agaaatggatgcacaaaaatgcggtgttcgttcttcttctttatcttatttcttattgtcatccgtctttgaaatggatacacaaaaatgtgacttacaa |
117 |
Q |
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| T |
9821601 |
agaaatggatgcacaaaaatgtggtgttcgttcttcttctttatcttatttcttattgtcatccgtctttgaaatggatacacaaaaatgtgacttacaa |
9821502 |
T |
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| Q |
118 |
tgagttgattcaaatgggtgctaatccatctttgaaatgtcttatattgtgctccaccttcccggaccaaagattatgcagataatgttaggtaacaaat |
217 |
Q |
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| T |
9821501 |
tgagttgattcaaatgggtgttaatccatctttgaaatgtcttatattgtgctccaccttcccggaccaaagattatgcagataatgttaggtaacaaat |
9821402 |
T |
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| Q |
218 |
cttaggattaattccattagtgtgtact |
245 |
Q |
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| T |
9821401 |
cttaggattaattccattagtgtgtact |
9821374 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 38875865 - 38875787
Alignment:
| Q |
152 |
aaatgtcttatattgtgctccaccttcccggaccaaagattatgcagataatgttaggtaacaaatcttaggattaatt |
230 |
Q |
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| T |
38875865 |
aaatgtcttatattgtgctccaccttcccgaaccaaagactatgctgataatgttaggtaataaatcttaggattaatt |
38875787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 38875932 - 38875890
Alignment:
| Q |
114 |
acaatgagttgattcaaatgggtgctaatccatctttgaaatg |
156 |
Q |
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| T |
38875932 |
acaatgagttgattcaaatgggtattaatccatctttgaaatg |
38875890 |
T |
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