View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_67 (Length: 241)
Name: NF11168_high_67
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_67 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 2124894 - 2125105
Alignment:
| Q |
19 |
ctattgtgaaagcaccttctccaccattggtgaaaacaccaccatatcaatcaccaccagtgaaaccaacaccaccaattgtgaaatcacctccttctcc |
118 |
Q |
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| T |
2124894 |
ctattgtgaaagcaccttctccaccattggtgaaaacaccaccatatcaatcaccaccagtgaaaccaacaccacctattgtgaaatcacctccttctcc |
2124993 |
T |
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| Q |
119 |
accattggtaaaatcaccaccttatcaatcaccacctattgttaaggcaccttctccccctctagtgaaaccaactccacctattgtgaaatcacctcct |
218 |
Q |
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| T |
2124994 |
accattggtaaaatcaccaccttatcaatcaccacctattgttaaggcaccttctccccctctagtgaaaccaactccacctattgtgaaatcacctcct |
2125093 |
T |
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| Q |
219 |
tctcctcctttg |
230 |
Q |
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|||||||||||| |
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| T |
2125094 |
tctcctcctttg |
2125105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 2125057 - 2125149
Alignment:
| Q |
77 |
agtgaaaccaacaccaccaattgtgaaatcacctccttctccaccattggtaaaatcaccaccttatcaatcaccacctattgttaaggcacc |
169 |
Q |
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| T |
2125057 |
agtgaaaccaactccacctattgtgaaatcacctccttctcctcctttggtgaaaacaccaccttatcaatcaccacctatagtgaaggcacc |
2125149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 2125091 - 2125134
Alignment:
| Q |
33 |
ccttctccaccattggtgaaaacaccaccatatcaatcaccacc |
76 |
Q |
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| T |
2125091 |
ccttctcctcctttggtgaaaacaccaccttatcaatcaccacc |
2125134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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