View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_78 (Length: 230)
Name: NF11168_high_78
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_78 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 41037367 - 41037167
Alignment:
| Q |
16 |
agagtacaagtttgcgaataagttttcattcaagttaatcaaacaaacatgatggaagagtgctaactatatcagctgctgcaaaagtaacaaaaaatga |
115 |
Q |
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| T |
41037367 |
agagtacaagtttgcgaataagttttcattcaagttaatcaaacaaacatgatggaagagtgctaactatatcagctgctgcaaaagtaacaaaaagtga |
41037268 |
T |
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| Q |
116 |
caa--actgtaactaacaatatattaaactactttaactaacaactgtttttcctggaatgggatcatgattcatcaataagtctggtggtaaattcatt |
213 |
Q |
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| T |
41037267 |
caaacactgtaactaacagtatattaaactactttaactaacaactgtttttcctggaatgggatcatgattcatcaataagtccggtggtaaattcatt |
41037168 |
T |
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| Q |
214 |
c |
214 |
Q |
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| T |
41037167 |
c |
41037167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 41031772 - 41031689
Alignment:
| Q |
101 |
agtaacaaaaaatgacaaactgtaactaacaatatattaaactactttaactaacaactgtttttcctggaatgggatcatgat |
184 |
Q |
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| T |
41031772 |
agtaacaaaaagtaagaaacactaactaacaatagatgaaactactttaactaacaactgtttttcctggaatgcgatcatgat |
41031689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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