View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_79 (Length: 227)
Name: NF11168_high_79
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_79 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 24174417 - 24174185
Alignment:
| Q |
1 |
agatgaaaaaagtgaaacatcatcatcaatttgatcagaaggagaagatgacattgatggagatgaaactaatgaggatgatgaagttggtggggtgcta |
100 |
Q |
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| T |
24174417 |
agatgaaaaaagtgaaacatcatcatcaatttgatcagaaggagaagatgacattgatggagatgaaactaatgaggatgatgaagttggtggggtgcta |
24174318 |
T |
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| Q |
101 |
atagtatcagtaacatcattgttactagaagaag------aagaagannnnnnnnnnnnnnnnnntactctttgaatagatttaggtgacatagcaatat |
194 |
Q |
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| T |
24174317 |
atagtattagtaacatcattgttactagaagaagaagaagaagaagcagcagcagcagcagcagctactctttgaatagatttaggtgacatagaaatat |
24174218 |
T |
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| Q |
195 |
tctcttgaggaatgaaatgtgaagaagtttcta |
227 |
Q |
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| T |
24174217 |
tctcttgaggaatgaaatgtgaagaagtttcta |
24174185 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 19186978 - 19187054
Alignment:
| Q |
7 |
aaaaagtgaaacatcatcatcaatttgatcagaaggagaagatgacattgatggagatgaaactaatgaggatgatg |
83 |
Q |
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| T |
19186978 |
aaaaagtgaaatatcttcatcaatttgatcagaaggaggagattaaattgattgagatgaaaccaatgaagatgatg |
19187054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 19187083 - 19187140
Alignment:
| Q |
160 |
tactctttgaatagatttaggtgacatagcaatattctcttgaggaatgaaatgtgaa |
217 |
Q |
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| T |
19187083 |
tactctttgaaatgatttaggtgacataccagtgttttcttgaggaacgaaatgtgaa |
19187140 |
T |
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