View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_8 (Length: 586)
Name: NF11168_high_8
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 41447000 - 41447578
Alignment:
| Q |
1 |
acatagcatcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattccttcaagttcaatggaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41447000 |
acatagcatcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattctattccttcaagttcaatggaaaa |
41447099 |
T |
|
| Q |
101 |
aatccttgaacaagaacatactgtcttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaacaaaaatataatatcataaaatt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41447100 |
aatccttgaacaagaacatactgttttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaagaaaaatataatatcataaaatc |
41447199 |
T |
|
| Q |
201 |
acttgttgtcgctgcatcccttgaggtgtagataaatnnnnnnncagaaaaatcaacatgtttgtaatagatatatatcttattttgattaaaatcaac- |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
41447200 |
acttgttgtcgctgcatcccttgaggtgtagataaataaaaaa-cagaaaaatcaacatgtttgtaatagatatatatcttattttgattaatatatatg |
41447298 |
T |
|
| Q |
300 |
------agaaaaatt----tcttgtgttttttacattagggtgtcgacatgtccaggttgtgtcagagcttcatagtggtttataatgatttgttaagtt |
389 |
Q |
| |
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|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447299 |
tagtgtagcaatgtcgttgtcttgtgttttttacattagggtgtcgacatgtccaggttgtgtcagagcttcatagtggtttataatgatttgttaagtt |
41447398 |
T |
|
| Q |
390 |
gagtaattcctctaatagttattcctagagtcaaagtatcaccactcatttccttttattttctccaagttgtttgatcattcctcatttaccttctgtg |
489 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447399 |
gagtaattccactaatagttattcctagagtcaaagtatcaccactcatttccttttattttctccaagttgtttgatcattcctcatttaccttctgtg |
41447498 |
T |
|
| Q |
490 |
tttttaaaaagactgcatggagaatatacttttggtaaaattgatttatgtttggtttcctttttctttgagttgtttaa |
569 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |
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| T |
41447499 |
tttttaaaaagactgcatcgagaatatacttttggtaaaattgatttttgtttggtttccttcctcttcgagttgtttaa |
41447578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 41457204 - 41457764
Alignment:
| Q |
18 |
aatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattccttcaagttcaatggaaaaaatccttgaacaagaac |
117 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||| |
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| T |
41457204 |
aatgtcatggagaaatctgcagttttgcatattgatccttcccttgtatcatctaattctattccttcaagttcaatgggaaacatccttgaacaagaac |
41457303 |
T |
|
| Q |
118 |
atactgtcttcagtgaaggaagtgttcgaccgattaatcaaggaaatcacagttgttgaacaaaaatataatatcataaa----attacttgttgtcgct |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||| || | ||||| ||| |
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| T |
41457304 |
atactgtcttcagtgaaggaagtgttcgaccggttaatcaaagaaatcacagttgttgaagaaaaatataatataataaataaaatcatctgttggtgct |
41457403 |
T |
|
| Q |
214 |
gcatcccttgaggtgtagataaatnnnnnnncagaaaaatcaacatgtttgtaatagatatatatcttattttgattaaaatcaa-----cagaaaaatt |
308 |
Q |
| |
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|||||| |||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||| | | | | || |
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| T |
41457404 |
gcatcctttgaggtgtaactaaa-----aagcagaaaaatcaacatgtgtgtaatagatatat--cttattttgattaatttatatgtggcggtgtcgtt |
41457496 |
T |
|
| Q |
309 |
-tcttgtgttttttacattaggg-tgtcgacatgtccaggttgtgtcagag------cttcatagtggtttataatgatttgttaagttgagtaattcct |
400 |
Q |
| |
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||||||| |||||||||||||| ||||||| |||| | ||||||||||| ||||||||| |||||| |||| ||||||||||||||||||| | |
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| T |
41457497 |
gtcttgtgctttttacattaggggtgtcgacgtgtcgtg-ttgtgtcagagttcgtgcttcatagttgtttatcatgacttgttaagttgagtaattcat |
41457595 |
T |
|
| Q |
401 |
ctaatagttattcctagagtcaaagtatcaccactcatttccttttattttctccaagttgtttgatcattcctcatttaccttctgtgtttttaaaaag |
500 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41457596 |
gtaagagttattcctagagtcaaagtatcaccactcatttccttttattttctccaagttgtttgatcattcctcctttaccttctgtgtttttaaaaag |
41457695 |
T |
|
| Q |
501 |
actgcatggagaatatacttttggtaaaattgatttatgtttggtttcctttttctttgagttgtttaa |
569 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
41457696 |
actgcatggagaatatacttttggtaaaattgatttatgtttggtttccttcctcttcgagttgtttaa |
41457764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 357 - 569
Target Start/End: Complemental strand, 16419100 - 16418891
Alignment:
| Q |
357 |
gcttcatagtggtttataatgatttgttaagttgagtaattcctctaatagttattcctagagtcaaagtatcaccactcatttccttttattttctcca |
456 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16419100 |
gcttgatagttgtttataatgacttgttaagttgagtaattcatgtaagagttattcctagagtcaaagtatcaccactcatttccttttattttctcca |
16419001 |
T |
|
| Q |
457 |
agttgtttgatcattcctcatttaccttctgtgtttttaaaaagactgcatggagaatatacttttggtaaaattgatttatgtttggtttcctttttct |
556 |
Q |
| |
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|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16419000 |
agtt---tgatcattccacctttaccttctgtgtttttaaaaagactgcatggagaatatacttttggtaaaattgatttatgtttggtttccttcctct |
16418904 |
T |
|
| Q |
557 |
ttgagttgtttaa |
569 |
Q |
| |
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| ||||||||||| |
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| T |
16418903 |
tcgagttgtttaa |
16418891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 37456199 - 37456113
Alignment:
| Q |
9 |
tcctgggacaatgtcatggagaaatctgcagtattgcatattgatccttccattgtatcatcaaattccattccttcaagttcaatg |
95 |
Q |
| |
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|||||||||||||||||||| |||||| ||| | ||||| ||||||||| ||||||||| |||| |||| |||||||||||| |
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| T |
37456199 |
tcctgggacaatgtcatggataaatcttcaggaacgcataccgatccttcccctgtatcatcctattcttttccatcaagttcaatg |
37456113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 18979651 - 18979609
Alignment:
| Q |
149 |
gattaatcaaggaaatcacagttgttgaacaaaaatataatat |
191 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
18979651 |
gattaatcaaggaaatcacacttgttgatgaaaaatataatat |
18979609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 18988114 - 18988074
Alignment:
| Q |
149 |
gattaatcaaggaaatcacagttgttgaacaaaaatataat |
189 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
18988114 |
gattaatcaaggaaatcacacttgttgatgaaaaatataat |
18988074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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