View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_high_80 (Length: 225)
Name: NF11168_high_80
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 24173937 - 24174130
Alignment:
| Q |
17 |
aaaaccaaaaccaaagccaatgcaacaacatgttttatcaacaaaagcagcatcaaatgataagaagaaaaaatacaaaggagtaagaatgagaagttgg |
116 |
Q |
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| T |
24173937 |
aaaaccaaaaccaaagccaatgcaacaacatgttttatcaacaaaagcagcatcaaatgataagaagaaaaaatacaaaggagtaagaatgagaagttgg |
24174036 |
T |
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| Q |
117 |
ggttcttgggtttcagaaataagagcaccaaatcaaaaaacaagaatatggttaggttcttattcaactgcagaagctgctgcaagagcctatg |
210 |
Q |
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| T |
24174037 |
ggttcttgggtatcagaaataagagcaccaaatcaaaaaacaagaatatggttaggttcttattcaactgcagaagctgctgcaagagcctatg |
24174130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 32669856 - 32669985
Alignment:
| Q |
81 |
aagaaaaaatacaaaggagtaagaatgagaagttggggttcttgggtttcagaaataagagcaccaaatcaaaaaacaagaatatggttaggttcttatt |
180 |
Q |
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| T |
32669856 |
aagaagaagtacaaaggagtaagaatgaggagttggggttcatgggtatcagagattagagcaccaaatcaaaaaacaagaatttggttaggttcttatt |
32669955 |
T |
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| Q |
181 |
caactgcagaagctgctgcaagagcctatg |
210 |
Q |
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| T |
32669956 |
caactgcagaagctgcagctagagcttatg |
32669985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 47038480 - 47038432
Alignment:
| Q |
130 |
cagaaataagagcaccaaatcaaaaaacaagaatatggttaggttctta |
178 |
Q |
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|||||||||||| ||||||| ||| | |||||||||||||||||||||| |
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| T |
47038480 |
cagaaataagagaaccaaataaaagatcaagaatatggttaggttctta |
47038432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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