View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_11 (Length: 522)
Name: NF11168_low_11
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 23 - 493
Target Start/End: Complemental strand, 5836698 - 5836225
Alignment:
| Q |
23 |
atgaaggcttcgtccgcggtggctgtgaggtggaggaagaggaggatgaaggtgttgatcatgatatggaagatgaaaatgaagcagcttcatggctttt |
122 |
Q |
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| T |
5836698 |
atgaaggcttcgtccgcggtggttgtgaggtggaggaagaggaggatgaaggtgttgatcatgatatggaagatgaaaatgaagcagcttcatggctttt |
5836599 |
T |
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| Q |
123 |
gttgaatcctctaaagaacaacaataacaatagtaacaacaacattagcaatgatcataatcaagtggctaataatggatatttgtttagtggagaagtt |
222 |
Q |
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| T |
5836598 |
gttgaatcctctaaagaacaacaataacaatagtaacaacaacattagcaatgatcataatcaagtggctaataatggatatttgtttagtggagaagtt |
5836499 |
T |
|
| Q |
223 |
gatgagtatttggaccttgttgattgtaattcttgtggtggtgatgaaaacactttcaataccaataatactcatcatcatgatgagtatagtnnnnnnn |
322 |
Q |
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| T |
5836498 |
gatgagtatttggaccttgttgattgtaattcttgtggtggtgatgaaaacactttcactaccaataatactcatcatcatgatgagtatagtcaacaac |
5836399 |
T |
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| Q |
323 |
nnnnnnnnnnngatcattatggtgttcctcaaaaaagctatgttggtgatagtgttgttcctgttcaacaa---caggtacagaattttcaacttgggtt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5836398 |
aacaacaacaagatcattatggtgttcctcaaaaaagctatgttggtgatagtgttgttcctgttcaacaacagcaggtacagaattttcaacttgggtt |
5836299 |
T |
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| Q |
420 |
ggaatttgagtcttccaaagctggattcagttacaatggtggttctattagtcaaagtgtaagatttttcaatt |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5836298 |
ggaatttgagtcttccaaagctggattcagttacaatggtggttctattagtcaaagtgtaagatttttcaatt |
5836225 |
T |
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