View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_12 (Length: 517)
Name: NF11168_low_12
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 214 - 504
Target Start/End: Complemental strand, 37406475 - 37406186
Alignment:
| Q |
214 |
tgactaatacaggaaacatttaagtatcaaacaaacaacaaactttcgagaaatctcatttgagaatcaaactgactaactagacacacgggannnnnnn |
313 |
Q |
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| T |
37406475 |
tgactaatacaggaaacatttaagtatcaaacaaacaacaaactttcgagaaatctcatttgagaatcaaactgactaactagacacatgggattttttt |
37406376 |
T |
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| Q |
314 |
nngtaattttggttaattcagatactataatgaatccaccggacacattcaagaaccaaagttaccgttcactcaattataatattgtaagataaaagtt |
413 |
Q |
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| T |
37406375 |
t-gtaattttggttaattcagttactataatgaatccaccggacacattcaagaaccaaagttaccgttcactcaattataatattgtaagataaaagtt |
37406277 |
T |
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| Q |
414 |
tatagtcatacctgtaaggactcttatgcattgatttggaaacttaaaattcttaatcagaagctctctcatgttattggtatcattaatg |
504 |
Q |
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| T |
37406276 |
tatagtcatacctgtaaggactcttatgcattgatttggaaacttaaaattcttaatcagaagctctctcatgttattggtatcattaatg |
37406186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 37406633 - 37406524
Alignment:
| Q |
108 |
tgtagcacaatgtggaggttaagcatgtagcttagaccatatatgagatctt---attaaggaacaatttagtggtatagtgaccatgatgaatacaaat |
204 |
Q |
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| T |
37406633 |
tgtagcacaatgtggaggttaagcatgtagcttagaccatatatgagatcttcttattaaggaacattttagtggtatagtgaccatgatgaatacaaat |
37406534 |
T |
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| Q |
205 |
tatgtaagtt |
214 |
Q |
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| T |
37406533 |
tatgtaagtt |
37406524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 37406727 - 37406649
Alignment:
| Q |
2 |
caatatgttgtgttttgttggtattaagtcgacattctgctcttgttctacgtaaaattcgttttagtttacaaatatg |
80 |
Q |
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| T |
37406727 |
caatatgttgtgtttcgttggtattaaatcgacattctgctcttgttctgcgtaaaattcgttttagtttacaaatatg |
37406649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 36163454 - 36163502
Alignment:
| Q |
413 |
ttatagtcatacctgtaaggactcttatgcattgatttggaaacttaaa |
461 |
Q |
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| T |
36163454 |
ttatagtcatacctgtgaggactcctatgcactcatttggaaccttaaa |
36163502 |
T |
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