View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_low_18 (Length: 455)

Name: NF11168_low_18
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_low_18
NF11168_low_18
[»] chr1 (2 HSPs)
chr1 (18-432)||(10753218-10753632)
chr1 (375-430)||(4865226-4865281)
[»] chr8 (10 HSPs)
chr8 (36-241)||(2709014-2709219)
chr8 (49-326)||(2982431-2982708)
chr8 (18-243)||(2707758-2707983)
chr8 (36-242)||(3004508-3004714)
chr8 (45-172)||(3280304-3280431)
chr8 (34-84)||(2991488-2991538)
chr8 (103-248)||(3168048-3168193)
chr8 (48-172)||(13793463-13793587)
chr8 (296-347)||(2706681-2706733)
chr8 (125-248)||(3171536-3171659)
[»] chr6 (1 HSPs)
chr6 (36-165)||(18357902-18358031)
[»] chr5 (1 HSPs)
chr5 (355-430)||(8437586-8437661)
[»] chr7 (2 HSPs)
chr7 (125-248)||(3916876-3916999)
chr7 (125-248)||(7161736-7161859)


Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 10753632 - 10753218
Alignment:
Q  18 acatggtgttctgaccttaaggaattaccagattggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10753632 acatggtgttctgaccttaaggaattaccagattggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgc 10753533  T
Q  118 ctaaagaaatgcctcgtcttaccaacttaaaaaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcc 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10753532 ctaaagaaatgcctcgtcttaccaacttaaaaaccttagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcc 10753433  T
Q  218 taaaatcgctcacatcccaaacatagtcttacaaaaatttcattggcatgagaaaggtaccgactcttatttttggcctccattattttttattgaaaca 317  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10753432 taaaatcgctcacatcccaaacatagtcttacaaaaattttattggcatgagaaaggtaccgactcttatttttggtctccattattttttattgaaaca 10753333  T
Q  318 ctttttaatgtttgttgctgtactagtttactttatgagaagtgctatatatctagagagattttgccacgaagtgctcccgaaatagtgtttatccaat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10753332 ctttttaatgtttgttgctgtactagtttactttatgagaagtgctatatatctagagagattttgccacgaagtgctcccgaaatagtgtttatccaat 10753233  T
Q  418 aaaaatggctaacag 432  Q
    |||||| ||||||||    
T  10753232 aaaaatcgctaacag 10753218  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 4865281 - 4865226
Alignment:
Q  375 gagattttgccacgaagtgctcccgaaatagtgtttatccaataaaaatggctaac 430  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  4865281 gagattttgccacgaagtgctcccgaaatagtgtttaaccaataaaaatcgctaac 4865226  T

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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 2709219 - 2709014
Alignment:
Q  36 aaggaattaccagattggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgcctaaagaaatgcctcgtc 135  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  | |||||| |||||| |   |||||| | | |||||| || |    
T  2709219 aaggcattaccagattggatatgcaacatctcatcacttcagcatcttaaggtgaaggaatgcagagatttggtagatctgcctgacggaatgccacgcc 2709120  T
Q  136 ttaccaacttaaaaaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcctaaaatcgctcacatccc 235  Q
    |||| || ||| | ||| |||||||||||| |||||||||||||||||| ||||||  ||||||| |||||| |||  |  ||||||| |||||||||||    
T  2709119 ttacaaaattacataccttagaaatcattggatgtccactcttaattgacgaatgtcagagagaagcaagtgtaacttgctctaaaattgctcacatccc 2709020  T
Q  236 aaacat 241  Q
    ||||||    
T  2709019 aaacat 2709014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 49 - 326
Target Start/End: Original strand, 2982431 - 2982708
Alignment:
Q  49 attggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgcctaaagaaatgcctcgtcttaccaacttaaa 148  Q
    |||||||||||||||||||||||||||| ||  ||  ||||| |  ||| ||| |||||| |   |||||| | | |||||| |||||||| |||||| |    
T  2982431 attggatatgcaacatctcatcacttcaacacattgaggtgtgcggttgtagagatttggaagatctgcctgaggcaatgccacgtcttacaaacttaca 2982530  T
Q  149 aaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcctaaaatcgctcacatcccaaacatagtctta 248  Q
     ||| |||||||||||||||||||| |||||  | |  |||||  || |||||||||||||||  || ||||||| |||||||||||||||||| |||||    
T  2982531 taccttagaaatcattgaatgtccattcttagctcaacaatgtgagacagaaacaagtgcaacttggtctaaaattgctcacatcccaaacataatctta 2982630  T
Q  249 caaaaatttcattggcatgagaaaggtaccgactcttatttttggcctccattattttttattgaaacactttttaat 326  Q
     || ||  || |||| || ||||||||||||| | |||||||||| |||| |||||||||||||| || || ||||||    
T  2982631 aaagaaagtctttgggattagaaaggtaccgattattatttttggactccgttattttttattgatacgctctttaat 2982708  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 2707983 - 2707758
Alignment:
Q  18 acatggtgttctgaccttaaggaattaccagattggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgc 117  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| | | |   | || |   ||||    |||||||||||||||    
T  2707983 acatggtgttctcacctaaaggcattaccagattggatatgcaacatctcatcacttcaacgtatcgagatgaagtcttgctataatttggcattgctgc 2707884  T
Q  118 ctaaagaaatgcctcgtcttaccaacttaaaaaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcc 217  Q
    || | | |||| | |||||||| |||||| | ||| ||||||||| |   ||||||||||||||||||||||||  || | |||||||||||||  || |    
T  2707883 ctgatggaatgacacgtcttacaaacttacataccttagaaatcaatagttgtccactcttaattgaggaatgtcagacaaaaacaagtgcaacttggtc 2707784  T
Q  218 taaaatcgctcacatcccaaacatag 243  Q
    |||||| | |||||||||||||||||    
T  2707783 taaaattgatcacatcccaaacatag 2707758  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 3004508 - 3004714
Alignment:
Q  36 aaggaattaccagattggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgcctaaagaaatgcctcgtc 135  Q
    |||| |||||||||||||||||||||| |||||||||| || ||| |   | ||  | | |||||| ||||||||||||||||  ||| |||||||||||    
T  3004508 aaggcattaccagattggatatgcaacctctcatcactgcatcatatagagatgatcaactgcagagatttggcattgctgccacaaggaatgcctcgtc 3004607  T
Q  136 ttaccaacttaaaaaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcctaaaatcgctcacatccc 235  Q
    |||| ||||||   ||| ||||| ||||| |||||||||| ||| |||| |||||   || ||||||||||||||   || ||||||| |||||||||||    
T  3004608 ttactaacttatgcaccttagaattcattaaatgtccacttttagttgaagaatgccagacagaaacaagtgcaatttggtctaaaattgctcacatccc 3004707  T
Q  236 aaacata 242  Q
    |||||||    
T  3004708 aaacata 3004714  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 3280431 - 3280304
Alignment:
Q  45 ccagattggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgcctaaagaaatgcctcgtcttaccaact 144  Q
    |||||||||||||||||  ||||||||||||||||||||| ||||||  |||||| | |||||||||  |||||| ||| |||||| ||||| || ||||    
T  3280431 ccagattggatatgcaatctctcatcacttcagcatcttagggtgtatgattgcataaatttggcatcactgcctgaaggaatgccccgtctaactaact 3280332  T
Q  145 taaaaaccatagaaatcattgaatgtcc 172  Q
    || | |||||||||||||||| ||||||    
T  3280331 tacagaccatagaaatcattggatgtcc 3280304  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 2991488 - 2991538
Alignment:
Q  34 ttaaggaattaccagattggatatgcaacatctcatcacttcagcatctta 84  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  2991488 ttaaggcattaccagattggatatgcaaaatctcatcacttcagcatctta 2991538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 248
Target Start/End: Complemental strand, 3168193 - 3168048
Alignment:
Q  103 atttggcattgctgcctaaagaaatgcctcgtcttaccaacttaaaaaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaac 202  Q
    ||||||| | ||||||  ||| |||||| |||||| |||| ||| | ||| | |||||| ||| |||||| |||||| |||| |||||| ||| | ||||    
T  3168193 atttggcttcgctgcccgaaggaatgccccgtctttccaaattacataccctggaaatctttggatgtcccctcttagttgaagaatgtgtgacacaaac 3168094  T
Q  203 aagtgcaaccgggcctaaaatcgctcacatcccaaacatagtctta 248  Q
    |||||||||  || | |||||  ||||||||||||||||| |||||    
T  3168093 aagtgcaacatggtccaaaatttctcacatcccaaacataatctta 3168048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 13793463 - 13793587
Alignment:
Q  48 gattggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgcctaaagaaatgcctcgtcttaccaacttaa 147  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||  | |||| | |||||||||  |||||| ||| |||||    ||| |||||||||     
T  13793463 gattggatatgcaacctctcatcgcttcagcatcttagggtgtatgactgcataaatttggcatcactgcctgaaggaatgctcaatctaaccaacttac 13793562  T
Q  148 aaaccatagaaatcattgaatgtcc 172  Q
    | ||| |||||||||| | ||||||    
T  13793563 agaccctagaaatcatcggatgtcc 13793587  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 2706733 - 2706681
Alignment:
Q  296 tccattattttttattgaaacactttttaa-tgtttgttgctgtactagttta 347  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||| ||||    
T  2706733 tccattattttttattgaaacgctttttaattttttgttgctgtactaattta 2706681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 3171659 - 3171536
Alignment:
Q  125 aatgcctcgtcttaccaacttaaaaaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcctaaaatc 224  Q
    |||||| | |||| |||| ||| | ||| ||||| ||||||| ||||| || ||| |||| ||||||  || | |||||||||||||  |||| |||||     
T  3171659 aatgccccatcttgccaaattacagaccctagaagtcattgattgtcctcttttacttgaagaatgtgagacacaaacaagtgcaacgtggcccaaaatt 3171560  T
Q  225 gctcacatcccaaacatagtctta 248  Q
    |||||||| ||||||||| |||||    
T  3171559 gctcacattccaaacataatctta 3171536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 18357902 - 18358031
Alignment:
Q  36 aaggaattaccagattggatatgcaacatctcatcacttcagcatcttacggtgtaccattgcagatatttggcattgctgcctaaagaaatgcctcgtc 135  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||  |  ||||| |   |||||| ||| |||||| ||||    
T  18357902 aaggcattaccagattggatatgcaacatctcatcacttcagcatcttgcggtgtacgggtgcgaaagtttggtagatctgcctgaaggaatgccacgtc 18358001  T
Q  136 ttaccaacttaaaaaccatagaaatcattg 165  Q
    |||| |||||| | ||| ||||||||||||    
T  18358002 ttacaaacttacacaccttagaaatcattg 18358031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 8437586 - 8437661
Alignment:
Q  355 agaagtgctatatatctagagagattttgccacgaagtgctcccgaaatagtgtttatccaataaaaatggctaac 430  Q
    |||||||||||||||| | ||||||||| ||||||||| ||| |||||||| ||||| ||||||||||| ||||||    
T  8437586 agaagtgctatatatccatagagattttaccacgaagtactcgcgaaatagcgtttaaccaataaaaattgctaac 8437661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 3916999 - 3916876
Alignment:
Q  125 aatgcctcgtcttaccaacttaaaaaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcctaaaatc 224  Q
    |||||| |||||| |||| ||| | ||| |||||||||||  |||||| ||||||||||| ||||||  || | |||||||||||||  |||  |||||     
T  3916999 aatgccacgtcttgccaaattacagaccctagaaatcattcgatgtcccctcttaattgaagaatgtgagacacaaacaagtgcaacatggcacaaaatt 3916900  T
Q  225 gctcacatcccaaacatagtctta 248  Q
     ||||||||||||||||| |||||    
T  3916899 tctcacatcccaaacataatctta 3916876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 248
Target Start/End: Original strand, 7161736 - 7161859
Alignment:
Q  125 aatgcctcgtcttaccaacttaaaaaccatagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcctaaaatc 224  Q
    |||| |||||||  |||||||| | ||| |||||||||  || || || |||||| |||| ||||||  || | |||||||||||||  ||||||||||     
T  7161736 aatgtctcgtctggccaacttacagaccctagaaatcaccgagtgccccctcttacttgaagaatgtgagacacaaacaagtgcaacatggcctaaaatt 7161835  T
Q  225 gctcacatcccaaacatagtctta 248  Q
    ||||||||||||| |||| |||||    
T  7161836 gctcacatcccaatcataatctta 7161859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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