View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_19 (Length: 450)
Name: NF11168_low_19
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 212 - 437
Target Start/End: Original strand, 35225202 - 35225427
Alignment:
| Q |
212 |
gcagtcccaaacagacctgcagcagaaccgcaagaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttattt |
311 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35225202 |
gcagccccaaacagacctgcagcagaaccgcaagaatagggtgattcaaagagcaaatttgaagagatatttgtgagattcgtctttggctgagttattt |
35225301 |
T |
|
| Q |
312 |
aggtaaacatgtgctgcttttcttcaatgcatttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggat |
411 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35225302 |
aggtaaacatgtgctgcttttcttcaatgcatttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggat |
35225401 |
T |
|
| Q |
412 |
ccactaaacctttgattgttatatct |
437 |
Q |
| |
|
|||||||||||||| ||||||||||| |
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|
| T |
35225402 |
ccactaaacctttggttgttatatct |
35225427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 35225014 - 35225140
Alignment:
| Q |
24 |
cttgaaacagccaatattattaacacaagccggcataagaagcaccgagcaaggtaagaggaaagcaattacaaggtgccgaatatatgctaaacaccaa |
123 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35225014 |
cttgaaacagccaatattattaacacaagctggcataagaagcaccgagcaaggtaagaggaaagcaatttcaaggtgccgaatatatgctaaacaccaa |
35225113 |
T |
|
| Q |
124 |
accaaaatacattccgtatatatgcgg |
150 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
35225114 |
accaaaatacattccgtatatatgcgg |
35225140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 38864804 - 38864701
Alignment:
| Q |
25 |
ttgaaacagccaatattattaacacaagccggcataagaagcaccgagcaaggtaagaggaaagcaattacaaggtgccgaatatatgctaaacaccaaa |
124 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| ||||||||||| | ||| || ||| ||||||||||||||||||||| ||||||||| |
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| T |
38864804 |
ttgaaacagccaa-attattaaatcaagccggcataagacacaccgagcaagaacaaagggaaccaa-tacaaggtgccgaatatatgcaaaacaccaac |
38864707 |
T |
|
| Q |
125 |
ccaaaa |
130 |
Q |
| |
|
|||||| |
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|
| T |
38864706 |
ccaaaa |
38864701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 244 - 437
Target Start/End: Complemental strand, 8713065 - 8712872
Alignment:
| Q |
244 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
343 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
8713065 |
agaatggggcgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtacttcttttcttcaatgcat |
8712966 |
T |
|
| Q |
344 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatct |
437 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| |
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|
| T |
8712965 |
ttaaacctttaatacttttgtgttttgtttggtgattatgatattgattttgaaatgtagtattggatccactgaacctttggtagttatatct |
8712872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 244 - 437
Target Start/End: Complemental strand, 8670286 - 8670093
Alignment:
| Q |
244 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
343 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
8670286 |
agaatagggcgattaaaagagtagatttgaagagatatttgtgagattcgtcgttggttgagttatttagctaaacatgtgctgcctttcttcaatgcat |
8670187 |
T |
|
| Q |
344 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatct |
437 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
8670186 |
ttaaacctttaatacttttgtgttttgtttggtgattatgttattgattttgaaatgtagtattggatccactaaagctttcgttgttatatct |
8670093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 244 - 437
Target Start/End: Original strand, 8712492 - 8712685
Alignment:
| Q |
244 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
343 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
8712492 |
agaatagggtgattcaaagagcaaacttgaagagatatttgtgagattcgtcggtggctgagttatttaggtaaacatgtgttgcttttcttcaataaat |
8712591 |
T |
|
| Q |
344 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatct |
437 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
8712592 |
taaaacctttaattcttttgtgttttgtttggtgattatcgtattgattttgaaatgtcgtattggatccactaaacctttggttgttatatct |
8712685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 244 - 437
Target Start/End: Original strand, 8669715 - 8669907
Alignment:
| Q |
244 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
343 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8669715 |
agaatagggcgattcaaagagaagatttaaagagatatttgtgagatttgccgttggctgaattatttaggtaaacatgtgttgcttttcttcaatgcac |
8669814 |
T |
|
| Q |
344 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatct |
437 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
8669815 |
ttaaacctttaatacttttgtgttttgtttagtgattatggtattgattttgtaatgtagtattggatccact-aatctttggttgttatatct |
8669907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 29521092 - 29521193
Alignment:
| Q |
30 |
acagccaatattattaacacaagccggcataagaagcaccgagcaaggtaagaggaa-agcaattacaaggtgccgaatatatgctaaacaccaaaccaa |
128 |
Q |
| |
|
|||| ||||||||||| | |||||||| ||||| ||||| |||| ||||| | ||| | ||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
29521092 |
acagtcaatattattacctcaagccggtgtaagacgcaccaagcagggtaaaaagaagaacaattacaaggtgtcgaatatatgcgaaacaccaaaccaa |
29521191 |
T |
|
| Q |
129 |
aa |
130 |
Q |
| |
|
|| |
|
|
| T |
29521192 |
aa |
29521193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 244 - 437
Target Start/End: Original strand, 23445867 - 23446059
Alignment:
| Q |
244 |
agaatagggtgattcaaagagcagatttgaagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatgcat |
343 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23445867 |
agaatggggcgattcaaagagcagatttgaagagatgtttgtgagattcgccgttggctgagttatttaggaaaacatgtgctgcttttcttcaatgcat |
23445966 |
T |
|
| Q |
344 |
ttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgttatatct |
437 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
23445967 |
ttaaacc-ttaatacttttgtgttttgtttggtgattatggtattgattttgaaatttagtattggatccactaaaccattggttgttatatct |
23446059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 244 - 431
Target Start/End: Complemental strand, 23446437 - 23446247
Alignment:
| Q |
244 |
agaatagggtgattcaaa-gagcagatttg--aagagatatttgtgagattcgtcgttggctgagttatttaggtaaacatgtgctgcttttcttcaatg |
340 |
Q |
| |
|
||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
23446437 |
agaatagggcgattcaaaagagcagacttgtgaagagatatttgtgagattcgtcgttggcttagttatttaggtaaacatgtgctacttttcttcaatg |
23446338 |
T |
|
| Q |
341 |
catttaaacctttaataattttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgattgtt |
431 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23446337 |
catttaaacctttaatacttttgtgttttgtttggtgattatggtattgattttgaaatgtagtattggatccactaaacctttgtttgtt |
23446247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 32516685 - 32516806
Alignment:
| Q |
28 |
aaacagccaatattattaacacaagccggcataagaagcaccgagcaaggtaagaggaa-agcaattacaaggtgccgaatatatgctaaacaccaaacc |
126 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| ||||||||||||||| | ||| |||||||||||||||||||||||| |||||| ||| | |
|
|
| T |
32516685 |
aaacagccaatattattaacataagccggcgtaagacacaccgagcaaggtaaaaagaagcacaattacaaggtgccgaatatatgggaaacacaaaagc |
32516784 |
T |
|
| Q |
127 |
aaaata-cattccgtatatatg |
147 |
Q |
| |
|
||| | ||||||||||||||| |
|
|
| T |
32516785 |
taaacaccattccgtatatatg |
32516806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 9284415 - 9284375
Alignment:
| Q |
89 |
caattacaaggtgccgaatatatgctaaacaccaaaccaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9284415 |
caattacaaggtgccgaatatatgcgaaacaccaaaccaaa |
9284375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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