View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_2 (Length: 685)
Name: NF11168_low_2
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Original strand, 32631976 - 32632638
Alignment:
| Q |
18 |
agttggtttgttagctggatcatccatcttgcttctcacagttgtgtgggggacctgtgttattgttggcaagcaaagcttacgaaatgactcacattct |
117 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32631976 |
agttggattgttagctggatcatccatcttgcttctcacagttgtgtgggggacctgtgttattgttggcaagcaaagcttacgaaatgactctcattct |
32632075 |
T |
|
| Q |
118 |
tctgatacctcaagttcatcaacaggaagaataaaacaagttttgactggtttgctcttgattctatctatctgtttaaatcccttaatagttaaaa-aa |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| || |
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| T |
32632076 |
tctgatacctcaaattcatcaacaggaagaataaaacaagctttgactggtttgcttttgattctatctctttgtttaaatcccttaatagttaaaaaaa |
32632175 |
T |
|
| Q |
217 |
tcacatgtttatatttatgcactaatcatatcttactatgtaaatatgtcataatattattttctagagtttaatttttatatactcaaacgtaaaattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
32632176 |
tcacatgtttatatttatgcactaatcatatcttactatgtaaatatgtcataatattattttctagagtttaacttttatatactcaaacataaaattt |
32632275 |
T |
|
| Q |
317 |
tacactatcaacaaatcacatatttgactatagaagtagttatgattaaagtcaaacgttttaatatatgacaactatgatttattgaaagtgtgaaaaa |
416 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32632276 |
tacactatcaacaaatcacatatttgactttagaagttgttacgattaaaatcaaacgttttaatatatgacaactatgatttattgaaagtgtgaaaaa |
32632375 |
T |
|
| Q |
417 |
tctttatcttgttgatgatgt-----acctaaatcatatttcgaacatgatgtatatgtaaaacaatattacatgcattctcgaaacaaacatatgcatt |
511 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32632376 |
tctttatcttgttgatgatgtatatgaactaaatcatatttcgaacacgacgtatgtgtaaaacaatattacatgcattctcgaaacaaacatatgcatt |
32632475 |
T |
|
| Q |
512 |
tcatacttgaagtttcaaattcttcaattaggattacctagactcctttttacttgtttgatttgaatcattaatgtgtacnnnnnnnattggatttatc |
611 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
32632476 |
tcatacttgaagtttcaaattcttcaattaggaacacctagactccttttaagttgtttgatgtgaatcattaatgtgtac-ttttttattgaatttatc |
32632574 |
T |
|
| Q |
612 |
ataggttatggtattactatggatgtagacactagaaagatggcaagaattatggttttctctg |
675 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32632575 |
ataggttatggtattactatggatgtagacactagaaagatggcaagaattatgcttttctctg |
32632638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 32613299 - 32613467
Alignment:
| Q |
18 |
agttggtttgttagctggatcatccatcttgcttctcacagttgtgtgggggacctgtgttattgttggcaagcaaagcttacgaaatgactcacattct |
117 |
Q |
| |
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|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |
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| T |
32613299 |
agttggattattagctggatcatccatcctgcttctcacagttgtgtgggggacctgtgttattgttggcaagcaaagttttaaaaatgactctcattct |
32613398 |
T |
|
| Q |
118 |
tctgatacctcaagttcatcaacaggaagaataaaacaagttttgactggtttgctcttgattctatct |
186 |
Q |
| |
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|||||||||||| || |||||| |||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
32613399 |
tctgatacctcatatttatcaaccggaagaataaaacaagctttgactggtttgctcttaattctatct |
32613467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 505 - 675
Target Start/End: Original strand, 32613783 - 32613951
Alignment:
| Q |
505 |
atgcatttcatacttgaagtttcaaattcttcaattaggattacctagactcctttttacttgtttgatttgaatcattaatgtgtacnnnnnnnattgg |
604 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| |||||| |||||||| || || ||| |||||||| |||||||||| || |
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| T |
32613783 |
atgcatttcatacatgaagttttaaattcttcaattagaattaccataactcctttatagtttttt-atttgaattcttaatgtgtaatattttt-ttat |
32613880 |
T |
|
| Q |
605 |
atttatcataggttatggtattactatggatgtagacactagaaagatggcaagaattatggttttctctg |
675 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
32613881 |
atttatgataggttatggcattactatggatatagacactagaaagatggcgagaatcatggttttctctg |
32613951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 32613520 - 32613612
Alignment:
| Q |
247 |
tcttactatgtaaatatgtcataatat--tattttctagagtttaatttttatatac-tcaaacgtaaaattttacactatcaacaaatcaca |
336 |
Q |
| |
|
|||||||||||||||||||||||| || | |||| ||||||| |||||||||| || ||||| ||| ||||||| ||||| ||||||||||| |
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| T |
32613520 |
tcttactatgtaaatatgtcataacattcttttttttagagttcaatttttatacacatcaaatgtagaattttatactataaacaaatcaca |
32613612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 16962242 - 16962160
Alignment:
| Q |
342 |
gactatagaagtagttatgattaaagtcaaacgttttaat-atatgacaactatgatttattgaaagtgtgaaaaatctttat |
423 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| || | |||||||||||| || || ||||| ||||| |||||| |
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| T |
16962242 |
gactttagaaatagttatgattaaagtcaaacgttttaatgatctaacaactatgattgatcgacagtgtaaaaaaactttat |
16962160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 16230766 - 16230821
Alignment:
| Q |
325 |
caacaaatcacatatttgactatagaagtagttatgattaaagtcaaacgttttaa |
380 |
Q |
| |
|
|||| ||||| || ||||| | ||||||||||||||||||||||||||| |||||| |
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|
| T |
16230766 |
caaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacattttaa |
16230821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 377
Target Start/End: Complemental strand, 32408129 - 32408099
Alignment:
| Q |
347 |
tagaagtagttatgattaaagtcaaacgttt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
32408129 |
tagaagtagttatgattaaagtcaaacgttt |
32408099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 26762916 - 26762879
Alignment:
| Q |
341 |
tgactatagaagtagttatgattaaagtcaaacgtttt |
378 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
26762916 |
tgactttagaagtaattatgattaaagtcaaacgtttt |
26762879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 30011769 - 30011846
Alignment:
| Q |
347 |
tagaagtagttatgattaaagtcaaac-gttttaat-atatgacaactatgatttattgaaagtgtgaaaaatcttta |
422 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| ||||| ||||| |||||| |||| |
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|
| T |
30011769 |
tagaagtagttatgattgaagtcaaacatttttaatgttatgacaagtatgattgattgacagtgtaaaaaatgttta |
30011846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 39560344 - 39560381
Alignment:
| Q |
341 |
tgactatagaagtagttatgattaaagtcaaacgtttt |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
39560344 |
tgactttagaagtagttatgattaaagtcaaacatttt |
39560381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 31650352 - 31650315
Alignment:
| Q |
341 |
tgactatagaagtagttatgattaaagtcaaacgtttt |
378 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
31650352 |
tgactttagaagtagttatgattaaagtcaaacatttt |
31650315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 5376356 - 5376320
Alignment:
| Q |
342 |
gactatagaagtagttatgattaaagtcaaacgtttt |
378 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
5376356 |
gactttagaagtagttatgattacagtcaaacgtttt |
5376320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 35170022 - 35169990
Alignment:
| Q |
341 |
tgactatagaagtagttatgattaaagtcaaac |
373 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
35170022 |
tgactttagaagtagttatgattaaagtcaaac |
35169990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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