View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_low_20 (Length: 443)

Name: NF11168_low_20
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_low_20
NF11168_low_20
[»] chr8 (2 HSPs)
chr8 (7-252)||(32736867-32737112)
chr8 (398-427)||(32736836-32736865)
[»] chr1 (2 HSPs)
chr1 (273-358)||(36795156-36795241)
chr1 (261-305)||(29321689-29321733)
[»] chr4 (2 HSPs)
chr4 (262-368)||(25224467-25224573)
chr4 (276-314)||(6170992-6171030)
[»] chr7 (1 HSPs)
chr7 (273-310)||(28059752-28059789)
[»] chr3 (1 HSPs)
chr3 (272-369)||(49443391-49443488)
[»] chr5 (1 HSPs)
chr5 (264-312)||(28447487-28447535)
[»] chr2 (1 HSPs)
chr2 (262-330)||(2132711-2132779)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 32737112 - 32736867
Alignment:
Q  7 gaagcagagattcgcctaattatagacaagtgggaaagaggattgcttagtggtagagatgaaagctcaacaccattggaagtatggaatgtttcctagt 106  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32737112 gaagcatagattcgcctaattatagacaagtgggaaagagggttgcttagtggtagagatgaaagctcaaaaccattggaagtatggaatgtttcctagt 32737013  T
Q  107 tgggcattgcagtgttaccacatgaaaaaagggttaccacatgacaagaggaatgggggttgagttgaatttatgtacactcaattgaccgaacatacaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32737012 tgggcattgcagtgttaccacatgaaaaaagggttaccacatgacaagaggaatgggggttgagttgaatttatgtacactcaattgaccgaacatacaa 32736913  T
Q  207 tgttttaaaataaattatacagtagtagtatatagccgcataaaaa 252  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
T  32736912 tgttttaaaataaattatatagtagtagtatatagccgcaaaaaaa 32736867  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 32736865 - 32736836
Alignment:
Q  398 tgttttatattagagtttttagaaattact 427  Q
    ||||||||||||||||||||||||||||||    
T  32736865 tgttttatattagagtttttagaaattact 32736836  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 36795156 - 36795241
Alignment:
Q  273 agtttaactcaattaggagggacattgcataatttatgtaggagacatagttcgaattatggacaatccacttcttcatatttaaa 358  Q
    |||||||||||||||  | |||||||||||||| |||||||||| |||  |||||||| || ||| || |||||| ||||||||||    
T  36795156 agtttaactcaattattaaggacattgcataatatatgtaggagtcatgtttcgaattctgaacactcaacttctccatatttaaa 36795241  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 29321733 - 29321689
Alignment:
Q  261 atcgtcctcgagagtttaactcaattaggagggacattgcataat 305  Q
    ||||| |||| ||||||||||||||||| || |||||||||||||    
T  29321733 atcgttctcgtgagtttaactcaattagtagagacattgcataat 29321689  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 368
Target Start/End: Original strand, 25224467 - 25224573
Alignment:
Q  262 tcgtcctcgagagtttaactcaattaggagggacattgcataatttatgtaggagacatagttcgaattatggacaatccacttcttcatatttaaatat 361  Q
    |||||| |||||| ||||||||| | | ||||||||||||||||||||| ||| | |  ||||||||    |||||  ||||||||||||||||| || |    
T  25224467 tcgtccccgagagcttaactcaactggtagggacattgcataatttatgcaggggtcggagttcgaacctcggacaccccacttcttcatatttatatgt 25224566  T
Q  362 gtgagct 368  Q
    |||||||    
T  25224567 gtgagct 25224573  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 6171030 - 6170992
Alignment:
Q  276 ttaactcaattaggagggacattgcataatttatgtagg 314  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  6171030 ttaactcaattggtagggacattgcataatttatgtagg 6170992  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 28059752 - 28059789
Alignment:
Q  273 agtttaactcaattaggagggacattgcataatttatg 310  Q
    |||||||||||||||  |||||||||||||||||||||    
T  28059752 agtttaactcaattaacagggacattgcataatttatg 28059789  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 49443488 - 49443391
Alignment:
Q  272 gagtttaactcaattaggagggacattgcataatttatgtaggagacatagttcgaattatggacaatccacttcttcatatttaaatatgtgagctc 369  Q
    ||||||| ||||||| | ||||||||||||||||||||| ||| | |  ||||||||    |||||  |||||||| || |||||||| |||||||||    
T  49443488 gagtttagctcaattggcagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccacttctccacatttaaatgtgtgagctc 49443391  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 28447487 - 28447535
Alignment:
Q  264 gtcctcgagagtttaactcaattaggagggacattgcataatttatgta 312  Q
    ||||||| |||||||||||| |||| ||||||| |||||||| ||||||    
T  28447487 gtcctcgtgagtttaactcagttagtagggacaatgcataatatatgta 28447535  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 2132711 - 2132779
Alignment:
Q  262 tcgtcctcgagagtttaactcaattaggagggacattgcataatttatgtaggagacatagttcgaatt 330  Q
    |||||| | |||||||| ||||| | | ||||||||||||||||||||| ||||| |  ||||||||||    
T  2132711 tcgtccccaagagtttagctcaactggtagggacattgcataatttatgcaggagccgaagttcgaatt 2132779  T

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