View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_low_23 (Length: 407)

Name: NF11168_low_23
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_low_23
NF11168_low_23
[»] chr5 (3 HSPs)
chr5 (297-358)||(17094669-17094730)
chr5 (210-262)||(17094144-17094196)
chr5 (108-190)||(13109730-13109812)
[»] chr7 (6 HSPs)
chr7 (117-194)||(41482428-41482505)
chr7 (117-190)||(10026467-10026540)
chr7 (97-194)||(24429700-24429797)
chr7 (117-182)||(45884662-45884726)
chr7 (117-170)||(2334018-2334071)
chr7 (109-185)||(45980473-45980549)
[»] chr2 (7 HSPs)
chr2 (117-193)||(1529687-1529763)
chr2 (117-190)||(18665190-18665263)
chr2 (114-183)||(39108696-39108765)
chr2 (106-190)||(7670396-7670480)
chr2 (106-194)||(40626488-40626576)
chr2 (87-185)||(6457598-6457696)
chr2 (114-179)||(39111666-39111731)
[»] chr8 (5 HSPs)
chr8 (96-183)||(11066492-11066579)
chr8 (106-148)||(556798-556840)
chr8 (112-194)||(9028642-9028724)
chr8 (117-190)||(7547887-7547960)
chr8 (74-194)||(39283694-39283814)
[»] chr4 (5 HSPs)
chr4 (117-194)||(19181421-19181498)
chr4 (117-185)||(22202956-22203024)
chr4 (93-194)||(2183301-2183402)
chr4 (117-194)||(26635269-26635346)
chr4 (108-194)||(34666430-34666516)
[»] chr3 (3 HSPs)
chr3 (115-179)||(48936324-48936388)
chr3 (300-358)||(48936130-48936188)
chr3 (117-201)||(38457767-38457851)
[»] chr1 (4 HSPs)
chr1 (106-190)||(50004908-50004992)
chr1 (87-194)||(9383235-9383342)
chr1 (94-190)||(4950198-4950293)
chr1 (85-190)||(4076358-4076463)
[»] chr6 (2 HSPs)
chr6 (104-194)||(8547443-8547533)
chr6 (104-194)||(8573796-8573886)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 17094669 - 17094730
Alignment:
297 actgattttcttcccaattgacttcaactccaacgagatttgttgttgctttcaaactgatt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17094669 actgattttcttcccaattgacttcaactccaacgagatttgttgttgctttcaaactgatt 17094730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 17094144 - 17094196
Alignment:
210 atcatttattctcacaaatcacaatacctccttcaactcccattgcttatgca 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
17094144 atcatttattctcacaaatcacaatacctccttcaactcccattgcttatgca 17094196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 13109730 - 13109812
Alignment:
108 atagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattag 190  Q
    |||||||| ||||| || ||| ||||| |||||||||||||  |  | ||||||||| ||||||||| |||||||||| ||||    
13109730 atagaaaatgataagtttaacatatttctaatcatatcctatccaccctttgttatttttatccttagtttttggtgggttag 13109812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 41482505 - 41482428
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||| ||||||||| |||||||||| ||||||||    
41482505 gataacttaaacctatttttaatcatatcctactcaccctttgttatttttatccttagtttttggtgggttagcaac 41482428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 10026467 - 10026540
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattag 190  Q
    ||||| || ||||||||| ||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||||    
10026467 gataagtttaacctatttctaatcatatcccactcctcctttgttattcttatccttagtttttggtggattag 10026540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 24429700 - 24429797
Alignment:
97 ttgatgtatcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    |||||| | |||||||||| ||||||||||| |||||| ||||| |||| |||||  | ||||||||| ||||||||| |||||||||| ||||||||    
24429700 ttgatgcaccaatagaaaatgataatttaaaactatttataatcctatcttactcaccctttgttatttttatccttagtttttggtgggttagcaac 24429797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 45884726 - 45884662
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttgg 182  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||||| ||||||| | |||||||    
45884726 gataatttaaaaccatttttaatcatatcctactcctc-tttgttatttttatcctaagtttttgg 45884662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 2334071 - 2334018
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatc 170  Q
    ||||| |||||||||||||||||| ||||||| ||  ||||||||||| |||||    
2334071 gataacttaaacctatttttaatcctatcctattcaccttttgttatttttatc 2334018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 45980549 - 45980473
Alignment:
109 tagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtgg 185  Q
    ||||||||||||| ||||||  |||||||||  |||| |  || || ||||||||| ||||||||| ||||||||||    
45980549 tagaaaaagataacttaaactcatttttaattctatcttgttcgtcctttgttatttttatccttactttttggtgg 45980473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 1529763 - 1529687
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaa 193  Q
    ||||| || ||| ||||||||||||||||||||||||| |||||| || |||||||| ||||||||||| |||||||    
1529763 gataagtttaacttatttttaatcatatcctactcctcctttgttgttcttatccttgatttttggtgggttagcaa 1529687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 18665190 - 18665263
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattag 190  Q
    ||||| |||||||||||| |||| ||||| |||||  | ||||||| | |||||||||||||||||||| ||||    
18665190 gataacttaaacctatttctaataatatcttactcaccctttgttaattttatccttaatttttggtgggttag 18665263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 39108765 - 39108696
Alignment:
114 aaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggt 183  Q
    |||||||| |||||| ||||||||||| ||| ||||||  ||||||| ||| |||||| |||||||||||    
39108765 aaagataaattaaacatatttttaatcttattctactcaccttttgtaatttttatccataatttttggt 39108696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 7670396 - 7670480
Alignment:
106 caatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattag 190  Q
    |||||||||| ||||| || ||||| ||| ||||| ||||||| |   ||||||| ||| |||||||||||||||||||| ||||    
7670396 caatagaaaatgataagtttaacctgtttctaatcctatcctattgagcttttgtaattcttatccttaatttttggtgggttag 7670480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 40626488 - 40626576
Alignment:
106 caatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    |||||| ||| |||||||||||  ||||| ||||| ||||||||||  | ||| ||||| |||||||||| ||||||||| ||| ||||    
40626488 caataggaaaggataatttaaatatatttctaatcctatcctactcaccctttattatttttatccttaaattttggtgggttaacaac 40626576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 6457598 - 6457696
Alignment:
87 aatctattgtttgatgtatcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtgg 185  Q
    ||||| ||||||| || | |||||||||| ||||| ||||| | ||||  ||||||||| ||  |  | ||||||||| ||||||||||||||||||||    
6457598 aatctgttgtttggtgcaccaatagaaaatgataaattaaatcaatttccaatcatatcttatccaccctttgttatttttatccttaatttttggtgg 6457696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 39111731 - 39111666
Alignment:
114 aaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttt 179  Q
    ||||| || |||||| ||||||||||| |||||||| |  | ||||||||| ||||||||||||||    
39111731 aaagacaaattaaacatatttttaatcgtatcctacacaccctttgttatttttatccttaatttt 39111666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 11066492 - 11066579
Alignment:
96 tttgatgtatcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggt 183  Q
    |||| ||| ||||||| ||| ||||| |||||||||||| ||||| ||||||||||  | ||||||||| ||||||||||||||||||    
11066492 tttggtgtgtcaataggaaaggataacttaaacctatttctaatcctatcctactcagcctttgttatttttatccttaatttttggt 11066579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 556798 - 556840
Alignment:
106 caatagaaaaagataatttaaacctatttttaatcatatccta 148  Q
    |||||||||| ||||| |||||||||||| |||||||||||||    
556798 caatagaaaatgataaattaaacctatttctaatcatatccta 556840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 9028724 - 9028642
Alignment:
112 aaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    |||| |||||||||||||||||||||||| ||||||| |   | ||||| ||| ||||||||  |||||| ||| ||||||||    
9028724 aaaaggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttatccttggtttttgatgggttagcaac 9028642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 7547887 - 7547960
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattag 190  Q
    ||||| || ||||||||||| ||| ||||| ||| ||| |||| |||| ||||||||| |||||||||| ||||    
7547887 gataagtttaacctattttttatcctatcccacttctcctttgatattattatccttagtttttggtgggttag 7547960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 39283694 - 39283814
Alignment:
74 catattctgagttaatctattgtttgatgtatcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatcctt 173  Q
    ||||| |||||| |||| ||||||||||| | ||| | |||| ||||| |||||||  |||| |||| |||| || ||  | ||| || || ||||| ||    
39283694 catatcctgagtcaatccattgtttgatgcaccaacataaaaggataaattaaaccatttttcaatcctatcatattcaccctttattttttttatcttt 39283793  T
174 aatttttggtggattagcaac 194  Q
    |||||||||||| ||||||||    
39283794 aatttttggtgggttagcaac 39283814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 19181498 - 19181421
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    ||||| |||||||||||| ||||| |||||||||| || ||| ||||| || |||||| |||||||||||||||||||    
19181498 gataaattaaacctatttctaatcctatcctactcatcctttattatttttgtccttagtttttggtggattagcaac 19181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 22202956 - 22203024
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtgg 185  Q
    ||||| || ||||||||||||||| |||||||| |||||||||||||| | |||||| | |||||||||    
22202956 gataagtttaacctatttttaatcctatcctacccctcttttgttattttaatcctttacttttggtgg 22203024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 2183301 - 2183402
Alignment:
93 ttgtttgatgtatcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagca 192  Q
    ||||||| || | |||||||||| ||||| ||||||  ||||  |||| |||||||  |  | ||||||||| |||||||||||||||||||| ||||||    
2183301 ttgtttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttgttatttttatccttaatttttggtgggttagca 2183400  T
193 ac 194  Q
    ||    
2183401 ac 2183402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 26635346 - 26635269
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    ||||| || |||||||||  |||  ||||||||||||| ||| ||||| ||||||||| |||||||||| ||||||||    
26635346 gataaatttaacctatttccaattctatcctactcctcctttattattcttatccttagtttttggtgggttagcaac 26635269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 34666430 - 34666516
Alignment:
108 atagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    |||| ||| ||||| |||||||||||| ||||||||||||| |||   ||| ||||| |||||| ||| |||| |||| ||||||||    
34666430 ataggaaatgataacttaaacctatttctaatcatatcctattccctctttcttatttttatccgtaactttttgtgggttagcaac 34666516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 48936388 - 48936324
Alignment:
115 aagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttt 179  Q
    |||||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||||| ||||    
48936388 aagataatttaaacctgtttttaatcctatcctacttctcctttgttatttttatccttagtttt 48936324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 48936188 - 48936130
Alignment:
300 gattttcttcccaattgacttcaactccaacgagatttgttgttgctttcaaactgatt 358  Q
    |||||||||||||||||| ||| ||||||||| ||| ||||||||||||||| ||||||    
48936188 gattttcttcccaattgatttccactccaacgtgatctgttgttgctttcaacctgatt 48936130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 38457767 - 38457851
Alignment:
117 gataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaacgtgacaa 201  Q
    ||||||||||||  |||| ||||| ||||||| ||  ||||||||| | ||||||||| | |||||||| |||||||| ||||||    
38457767 gataatttaaactcatttctaatcctatcctattcaccttttgttacttttatccttagtatttggtgggttagcaacatgacaa 38457851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 50004992 - 50004908
Alignment:
106 caatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattag 190  Q
    ||||| |||| |||||||||||||||||| ||||| ||||||| ||  | ||||||||| ||||||||| |||||||||| ||||    
50004992 caataaaaaaggataatttaaacctatttctaatcctatcctaatcaccctttgttatttttatccttagtttttggtgggttag 50004908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 9383342 - 9383235
Alignment:
87 aatctattgtttgatgtatcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtgga 186  Q
    |||| |||||||| || | |||||| ||  ||||| ||||||| |||| ||||| ||||||||||  | ||||||||| | |||||||||||||| |||     
9383342 aatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttatcctactcaccctttgttattttcatccttaatttttgatggg 9383243  T
187 ttagcaac 194  Q
    ||||||||    
9383242 ttagcaac 9383235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 4950198 - 4950293
Alignment:
94 tgtttgatgtatcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattag 190  Q
    |||||| || |||||||||||| ||||||||||||  ||||| |||||||||||| |   | ||||||||| |||||| || |||||||||| ||||    
4950198 tgtttggtgcatcaatagaaaatgataatttaaactcattttcaatcatatcctatttaccctttgttatttttatcc-tagtttttggtgggttag 4950293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 4076463 - 4076358
Alignment:
85 ttaatctattgtttgatgtatcaatagaaaaagataatttaaacctatttttaatcatatcctactc-ctcttttgttattgttatccttaatttttggt 183  Q
    |||||||  |||||| || |||||||| ||| ||||| |||||||||||  ||||| ||||||| || ||| |||||| || | ||||||| ||||||||    
4076463 ttaatctggtgtttggtgcatcaataggaaaggataaattaaacctattactaatcctatcctattcactc-tttgtttttctaatccttagtttttggt 4076365  T
184 ggattag 190  Q
    |||||||    
4076364 ggattag 4076358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 8547533 - 8547443
Alignment:
104 atcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    |||||||| ||| ||||| |||||||||||| ||||| |||| || ||  | ||||||||| |||| |||| |||||||||| ||||||||    
8547533 atcaataggaaaggataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaac 8547443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 8573886 - 8573796
Alignment:
104 atcaatagaaaaagataatttaaacctatttttaatcatatcctactcctcttttgttattgttatccttaatttttggtggattagcaac 194  Q
    |||||||| ||| ||||| |||||||||||| ||||| |||| || ||  | ||||||||| |||| |||| |||||||||| ||||||||    
8573886 atcaataggaaatgataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaac 8573796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University