View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_24 (Length: 406)
Name: NF11168_low_24
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 140 - 367
Target Start/End: Complemental strand, 256427 - 256200
Alignment:
| Q |
140 |
ttaatgtcaataaatgtttcttcatttcatttggtaaggggtccgacttaccacaaaattgtatattcaaccatgtaaaaacattttagtggatgatcgg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
256427 |
ttaatgtcaataaatgtttcttcatttcatttggtaaggggtccgacttaccacaaaattgtatattaaaccatgtaaaaacattttagtggatgatcgg |
256328 |
T |
|
| Q |
240 |
taaactacgattttaagtttttagatgtgttcaactcatcaaaacttaatgtacattttagacaactaataaatcatgtgattttttaccattttagacg |
339 |
Q |
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||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
256327 |
taaacaacgattttaagtttttagatgtgttctactcaccaaaacttaatgtacattttagacaactaataaatcatgtgatttttgaccattttaaacg |
256228 |
T |
|
| Q |
340 |
accatgttttcaacacttatagtatgtc |
367 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
256227 |
accatgttttcaacacttatagtatgtc |
256200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 140 - 367
Target Start/End: Original strand, 659493 - 659720
Alignment:
| Q |
140 |
ttaatgtcaataaatgtttcttcatttcatttggtaaggggtccgacttaccacaaaattgtatattcaaccatgtaaaaacattttagtggatgatcgg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
659493 |
ttaatgtcaataaatgtttcttcatttcatttggtaaggggtccgacttaccacaaaattgtatattaaaccatgtaaaaacattttagtggatgatcgg |
659592 |
T |
|
| Q |
240 |
taaactacgattttaagtttttagatgtgttcaactcatcaaaacttaatgtacattttagacaactaataaatcatgtgattttttaccattttagacg |
339 |
Q |
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||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
659593 |
taaacaacgattttaagtttttagatgtgttctactcaccaaaacttaatgtacattttagacaactaataaatcatgtgatttttgaccattttaaacg |
659692 |
T |
|
| Q |
340 |
accatgttttcaacacttatagtatgtc |
367 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
659693 |
accatgttttcaacacttatagtatgtc |
659720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 140 - 367
Target Start/End: Original strand, 845229 - 845456
Alignment:
| Q |
140 |
ttaatgtcaataaatgtttcttcatttcatttggtaaggggtccgacttaccacaaaattgtatattcaaccatgtaaaaacattttagtggatgatcgg |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
845229 |
ttaatgtcaataaatgtttcttcatttcatttggtaaggggtccgacttaccacaaaattgtatattaaaccatgtaaaaacattttagtggatgatcgg |
845328 |
T |
|
| Q |
240 |
taaactacgattttaagtttttagatgtgttcaactcatcaaaacttaatgtacattttagacaactaataaatcatgtgattttttaccattttagacg |
339 |
Q |
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||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
845329 |
taaacaacgattttaagtttttagatgtgttctactcaccaaaacttaatgtacattttagacaactaataaatcatgtgatttttgaccattttaaacg |
845428 |
T |
|
| Q |
340 |
accatgttttcaacacttatagtatgtc |
367 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
845429 |
accatgttttcaacacttatagtatgtc |
845456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 256555 - 256471
Alignment:
| Q |
47 |
ctttcaatcttttctcacaactttattatgcttttaatattattagtaactaactccatcgtaataatcactctaatcatcaatc |
131 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
256555 |
ctttcaatcttttctcacaactttattatgcttttaatattaatagtaactaactccatcgtaataatcactctaatcatcaatc |
256471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 659365 - 659449
Alignment:
| Q |
47 |
ctttcaatcttttctcacaactttattatgcttttaatattattagtaactaactccatcgtaataatcactctaatcatcaatc |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
659365 |
ctttcaatcttttctcacaactttattatgcttttaatattaatagtaactaactccatcgtaataatcactctaatcatcaatc |
659449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 845101 - 845185
Alignment:
| Q |
47 |
ctttcaatcttttctcacaactttattatgcttttaatattattagtaactaactccatcgtaataatcactctaatcatcaatc |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
845101 |
ctttcaatcttttctcacaactttattatgcttttaatattaatagtaactaactccatcgtaataatcactctaatcatcaatc |
845185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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