View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_26 (Length: 379)
Name: NF11168_low_26
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 33918644 - 33918296
Alignment:
| Q |
18 |
caaagacattctcatctcaaaagaccaaaacatatcagccagaatcttcattcccaaactcaacaacgatcaatttccaaaccaaaaactccctctcctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918644 |
caaagacattctcatctcaaaagaccaaaacatatcagccagaatcttcattcccaaactcaacaacgatcaatttccaaaccaaaaactccctctcctt |
33918545 |
T |
|
| Q |
118 |
gtttacttccatggtggtggtttctgcgtagaaacacctttctcaccaccataccacaatttcctcaacaccatcgtttcaaaagctaatgtaattgctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33918544 |
gtttacttccatggtggtggtttctgcgtagaaacacctttctcaccaccataccacaatttcctcaacaccatcgtttcaaaagctaatgttattgctg |
33918445 |
T |
|
| Q |
218 |
tttcagttgattacagaagagccccagaacaccctcttcctatagcatacgaagattcatggacttccctcaaatgggtcgtttctcatttgcatggaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918444 |
tttcagttgattacagaagagccccagaacaccctcttcctatagcatacgaagattcatggacttccctcaaatgggtcgtttctcatttgcatggaaa |
33918345 |
T |
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| Q |
318 |
tggttctgatgaatggatcaaccgttatgcagattttggaaaaatgttc |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918344 |
tggttctgatgaatggatcaaccgttatgcagattttggaaaaatgttc |
33918296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 33897089 - 33897018
Alignment:
| Q |
94 |
ccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaacacctttctcacca |
165 |
Q |
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|||| ||||||||||||| || |||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
33897089 |
ccaatccaaaaactccctgtctttgtctacttccatggtggtggtttctgcattgaaacacctttctcacca |
33897018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 33901762 - 33901833
Alignment:
| Q |
94 |
ccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaacacctttctcacca |
165 |
Q |
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|||| ||||||||||||||| ||||||||| |||||||||||| ||||||| | ||||| ||||| |||||| |
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| T |
33901762 |
ccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcacca |
33901833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 19643121 - 19642779
Alignment:
| Q |
18 |
caaagacattctcatctcaaaagaccaaaacatatcagccagaatcttcattcccaaactcaacaacgatcaatttccaaaccaaaaactccctctcctt |
117 |
Q |
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||||||| || |||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |
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| T |
19643121 |
caaagacgttttcatctcaaaagcccaaaacatatcagccagaatcttcattcccatacccaacaacgatgaatttccaaaccaaaaactccctctcctt |
19643022 |
T |
|
| Q |
118 |
gtttacttccatggtggtggtttctgcgtagaaacacctttctcaccaccataccacaatttcctcaacaccatcgtttcaaaagctaatgtaattgctg |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||| ||||||||||||| |||| |
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| T |
19643021 |
gtttacttccacggtggtggtttctgcgtagaaacacctttctcaccaacataccacaattacctcaataccattgtttctcaagctaatgtaatggctg |
19642922 |
T |
|
| Q |
218 |
tttcagttgattacagaagagccccagaacaccctcttcctatagcatacgaagattcatggacttccctcaaatgggtcgtttctcatttgcatggaaa |
317 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
19642921 |
tttcagttgattacagaagagccccagaacatcctcttcctatagcatacgaagattcatggacttccctcaaatgggtggcttctcatttgcatggaaa |
19642822 |
T |
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| Q |
318 |
tggttctgatgaatggatcaaccgttatgcagattttggaaaa |
360 |
Q |
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|||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
19642821 |
tggtcgtgatgaatggatcaacagttacgcagattttggaaaa |
19642779 |
T |
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