View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_27 (Length: 367)
Name: NF11168_low_27
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 4474753 - 4474415
Alignment:
| Q |
16 |
atcataacatctttgagccaactataatctctatagctagctcaaccaaattccatattcccctcacaaaacatcttagcaaattaaactcatatttttc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4474753 |
atcataacatctttgagccaactataatctctatagctagctcaaccaaattccatattcccctcacaaaacatcttagcaaa-----ctcatatttttc |
4474659 |
T |
|
| Q |
116 |
ttccttcnnnnnnntttcctccctttgtcatgggagcctttccacttttcccaccaatttccaaatgtagcacaaaagatagatcaaaccaaacagtggc |
215 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4474658 |
ttccttcaaaaaaatttcctccctttgtcatgggagcctttccacttttcccaccaatttccaaatgtagcacaaaagatagatcaaaccaaaccgtggc |
4474559 |
T |
|
| Q |
216 |
atccgacttagacggcacccttctcgtgtcgcgaagtgcatttccatactacatgctcgtcgcactcgaagctggaagcattctaagagctttaattctc |
315 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4474558 |
atccgacttagacggcacccttctcatgtcgcgaagtgcatttccatactacatgctcgtcgcactcgaagctggaagcattctaagagctttaattctc |
4474459 |
T |
|
| Q |
316 |
ttatccttagtccctttcgtatattttacatacctattcatctc |
359 |
Q |
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|||||||||||||||||||||||||| || ||||||||| |||| |
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| T |
4474458 |
ttatccttagtccctttcgtatatttcacgtacctattcgtctc |
4474415 |
T |
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