View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_low_28 (Length: 367)
Name: NF11168_low_28
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 366
Target Start/End: Complemental strand, 1702682 - 1702322
Alignment:
| Q |
7 |
gagagaagaagtgtagggataagtgatgagtttgaattttgaggagaaggtgaaggaataataggatggctaaggtgttgaataataagaggatgatgag |
106 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1702682 |
gagataagaggtgtagggataagtgatgagtttgaattttgaggagaaggtggaggaataataggatggttaaggtgttgaataataagaggatgatgag |
1702583 |
T |
|
| Q |
107 |
aaggaaagtgcttgttagtgtttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaataaaattg-aaagagtgactcatgaaaggt |
205 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
1702582 |
aaggaaagtgtttgctagtgtttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaataaaaatggaaagagtgactcatgaaaggt |
1702483 |
T |
|
| Q |
206 |
gacgtgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagaatagccaaagaaaacacatggcatgcttcga |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1702482 |
gacgtgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagagtagccaaagaaaacacatggcatgcttcga |
1702383 |
T |
|
| Q |
306 |
ttggataacttattttgagagtatggtcgaagccatgggtagcacagatatccaaagactc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1702382 |
ttggataacttattttgagagtatggtcgaagccatgggtagcacagacatccaaagactc |
1702322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 26591960 - 26592018
Alignment:
| Q |
210 |
tgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttg |
268 |
Q |
| |
|
||||| |||||||| || ||||||||||| || || || |||||||||||||||||||| |
|
|
| T |
26591960 |
tgtctggagagatataatttttgagtgggaggatggtagcattggtaggcatgatgttg |
26592018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University