View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_low_32 (Length: 339)
Name: NF11168_low_32
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 25886345 - 25886039
Alignment:
| Q |
20 |
tctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagcagtagtcaacattgtgatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25886345 |
tctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagcagtagtcaacattgtgatt |
25886246 |
T |
|
| Q |
120 |
gtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtgattgcttctttgtttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25886245 |
gtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtgattgcttctttgtttg |
25886146 |
T |
|
| Q |
220 |
ctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatattctcattggttaatcttccattatc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25886145 |
ctatttcagctgttttccgaattgtaaatgccagtgaggagaagttggaacttagtttgagaatagatgacatattctcattggttaatcttccattatc |
25886046 |
T |
|
| Q |
320 |
tttgttc |
326 |
Q |
| |
|
||||||| |
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|
| T |
25886045 |
tttgttc |
25886039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 44350189 - 44349889
Alignment:
| Q |
20 |
tctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagcagtagtcaacattgtgatt |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |
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|
| T |
44350189 |
tctaggaatattggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagctgtagtcaacatagtaata |
44350090 |
T |
|
| Q |
120 |
gtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtgattgcttctttgtttg |
219 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
44350089 |
gtgattctaatgttacacgaggaaaagttcaaatcttccaaacaccctttatccctaagaatctattggatagtaaactttgtgattgcttctttgtttg |
44349990 |
T |
|
| Q |
220 |
ctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatattctcattggttaatcttccattatc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
44349989 |
ctatttcagctgttttccgaattgtaaataccagtgaggaaaaaatggaacttagtttgagaatagatgatatattctcattggttaatcttccattatc |
44349890 |
T |
|
| Q |
320 |
t |
320 |
Q |
| |
|
| |
|
|
| T |
44349889 |
t |
44349889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 14305272 - 14304966
Alignment:
| Q |
20 |
tctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagcagtagtcaacattgtgatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| || || |
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|
| T |
14305272 |
tctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagttata |
14305173 |
T |
|
| Q |
120 |
gtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtgattgcttctttgtttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14305172 |
gtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttg |
14305073 |
T |
|
| Q |
220 |
ctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatattctcattggttaatcttccattatc |
319 |
Q |
| |
|
|| |||| ||| || | ||| | ||| || | ||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14305072 |
ctgtttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatc |
14304973 |
T |
|
| Q |
320 |
tttgttc |
326 |
Q |
| |
|
| ||||| |
|
|
| T |
14304972 |
tgtgttc |
14304966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 14321663 - 14321357
Alignment:
| Q |
20 |
tctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagcagtagtcaacattgtgatt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| ||||| |
|
|
| T |
14321663 |
tctaggaatcttggcttttactcaaaccaataaactttcttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtgata |
14321564 |
T |
|
| Q |
120 |
gtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtgattgcttctttgtttg |
219 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
14321563 |
gtgatactaatggtacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtaattgcaactttgtttg |
14321464 |
T |
|
| Q |
220 |
ctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatattctcattggttaatcttccattatc |
319 |
Q |
| |
|
|| ||||||| || | ||| | ||| || | ||| || || ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
14321463 |
ctgcttcagctattgttcgattgataactgtcggtgaagaaaagttggagcttagtttgaaaatagatgatatattctcattggttaatcttccattatc |
14321364 |
T |
|
| Q |
320 |
tttgttc |
326 |
Q |
| |
|
| ||||| |
|
|
| T |
14321363 |
tgtgttc |
14321357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 14283514 - 14283208
Alignment:
| Q |
20 |
tctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcaccttttcggttgtttcaagcagtagtcaacattgtgatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| || || |
|
|
| T |
14283514 |
tctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcata |
14283415 |
T |
|
| Q |
120 |
gtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctattggatagcaaactttgtgattgcttctttgtttg |
219 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||| |||||| |||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
14283414 |
gtgattctaatggtacatgagataaagttgaaagcttccacacaccctttaccacttagaatttattgggcagcaaactttgtgattgcttctttgttca |
14283315 |
T |
|
| Q |
220 |
ctatttcagctgttttccgaattgtaaatgccaatgaggagaaattggaacttagtttgagaatagatgacatattctcattggttaatcttccattatc |
319 |
Q |
| |
|
|| ||||||| || | ||||| ||| | ||| || ||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14283314 |
ctgcttcagctattgttcgaatgataaccgttggtgaaacaaagttggagcttaatttgagaatagatgacatattctctttggttaatcttccattatc |
14283215 |
T |
|
| Q |
320 |
tttgttc |
326 |
Q |
| |
|
| ||||| |
|
|
| T |
14283214 |
tgtgttc |
14283208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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