View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_34 (Length: 334)
Name: NF11168_low_34
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 39194886 - 39194568
Alignment:
| Q |
12 |
atgaagcagagtcaagatgcagctttgtacagaaattaagatagatgaccctaaaaagttaaggcatgaaagttgaaagggatagcaaccacaaacaaac |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39194886 |
atgaagcagagtcaagatgcagctttgtacagaaattaagatagatgaccctaaaaagttaaggcatgaaagttgaaagagatagcaaccacaaacaaac |
39194787 |
T |
|
| Q |
112 |
gtagtataaaggcaagaaccagcttttgggccctcactcacatgttcgttaaaatacatacagactttccaaagtttatatatgtaaccctcttgcctat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39194786 |
gtagtataaaggcaagaaccagcttttgggccctcactcacatgttcgttaaaatacatacagactttccaaagtttatatatgtaaccctcttgcctat |
39194687 |
T |
|
| Q |
212 |
ggtccccttcttaatttcaagatgctagtatagtttataaatacttgaccaaaaagaaaccgatatagatgtactcctataatctaatttaattcatttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39194686 |
ggtccccttcttaatttcaagatgctagtatagtttataaatacttgaccaaaaagaaaccgatatagatgtactcctataatctaatttaattcatttc |
39194587 |
T |
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| Q |
312 |
ataatcatgaatataattg |
330 |
Q |
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||||||||||||||||||| |
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| T |
39194586 |
ataatcatgaatataattg |
39194568 |
T |
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