View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_37 (Length: 312)
Name: NF11168_low_37
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_37 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 20212620 - 20212523
Alignment:
| Q |
119 |
ttaaagaagcttatatgcagaaatcctccatggggcagaaaattcattaggctaggagagtttggagtcctgacatccctccaaccaagtctctcctt |
216 |
Q |
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| T |
20212620 |
ttaaagaagcttatatccagaaatcctccatggggcagaaaattcattaggccaggagagtttggagtcctgacatccctccaaccaagtctctcctt |
20212523 |
T |
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Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 22106643 - 22106546
Alignment:
| Q |
119 |
ttaaagaagcttatatgcagaaatcctccatggggcagaaaattcattaggctaggagagtttggagtcctgacatccctccaaccaagtctctcctt |
216 |
Q |
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| T |
22106643 |
ttaaagaagcttatatccagaaatcctccatggggcagaaaattcattaggccaggagagtttggagtcctgacatccctccaaccaagtctctcctt |
22106546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 22806375 - 22806447
Alignment:
| Q |
2 |
aatgcactgatctaattcccccacacttaagcttttgctctccgagcaaatctcaagattaaagactcaaggt |
74 |
Q |
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| T |
22806375 |
aatgcactgatcaaattcccccacacttaagcttttgctcttcgagcaaatctcaagattaaagactcaaggt |
22806447 |
T |
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Target: scaffold0012 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 146678 - 146812
Alignment:
| Q |
154 |
cagaaaattcattaggctaggagagtttggagtcctgacatccctc--caaccaagtctctccttacttagagaatcatgcatgatagagttcctacaga |
251 |
Q |
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| T |
146678 |
cagaaaagtaattgggctaagaaagtttggagtgttgacatccctctccctctaagtctctctttacctggagaatcatgcatgatagagtccccaccga |
146777 |
T |
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| Q |
252 |
tgacaagcttatagaaagaggatgctcaatggctt |
286 |
Q |
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| T |
146778 |
tgacaaacttatggaaagaggatgttcaatggctt |
146812 |
T |
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