View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_38 (Length: 312)
Name: NF11168_low_38
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_38 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 312
Target Start/End: Original strand, 33918002 - 33918308
Alignment:
| Q |
6 |
agcagcacagaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgggtcatcggatcccaaacttgttggacaa |
105 |
Q |
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| T |
33918002 |
agcaacacaaaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgggtcatcggatcccgaacttgttggacaa |
33918101 |
T |
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| Q |
106 |
acaaacctccataaattatcagccaaagataagtgttcagatttctcagtagcctcagatccaaccctttcaacaccccaaaagaatgtatgaaccaaaa |
205 |
Q |
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| T |
33918102 |
acaaacctccataaattatcagccaaagataagtgttcagatttctcagtagcctcagatccaaccctttcaacaccccaaaagaatgtatgaaccaaaa |
33918201 |
T |
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| Q |
206 |
caatcccttcaaggttaatcccttgaagcccttgagttccaacacgaatagccatgtgatgtgcaatgtttgcaccagcactgtctcctgcaaagaacat |
305 |
Q |
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| T |
33918202 |
caatcccttcaaggttaatcccttgaagcccttgagttccaacacgaatagccatgtgatttgcaatgtttgcaccagcactgtctcctgcaaagaacat |
33918301 |
T |
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| Q |
306 |
ttttcca |
312 |
Q |
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||||||| |
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| T |
33918302 |
ttttcca |
33918308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 312
Target Start/End: Original strand, 19642479 - 19642785
Alignment:
| Q |
6 |
agcagcacagaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgggtcatcggatcccaaacttgttggacaa |
105 |
Q |
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| T |
19642479 |
agcaacacaaaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacatgtcatcgggtcccgaacttgttggacaa |
19642578 |
T |
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| Q |
106 |
acaaacctccataaattatcagccaaagataagt---gttcagatttctcagtagcctcagatccaaccctttcaacaccccaaaagaatgtatgaacca |
202 |
Q |
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| T |
19642579 |
acaaatcgccataaattatccacaaaagataaatattgttcaggtttctcag---cctcagatccaactctttccacaccccaaaagaatgcatgaacca |
19642675 |
T |
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| Q |
203 |
aaacaatcccttcaaggttaatcccttgaagcccttgagttccaacacgaatagccatgtgatgtgcaatgtttgcaccagcactgtctcctgcaaagaa |
302 |
Q |
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| T |
19642676 |
aaacaatcccttcaatgttaatcccttgaagcccttcagttccaacacgaatagccatgtggtgtgcaatgtttgcaccagcactgtctcctgcaaagaa |
19642775 |
T |
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| Q |
303 |
catttttcca |
312 |
Q |
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| T |
19642776 |
aacttttcca |
19642785 |
T |
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