View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_4 (Length: 634)
Name: NF11168_low_4
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 19 - 625
Target Start/End: Original strand, 26276571 - 26277177
Alignment:
| Q |
19 |
accgggttctacacatttgtgtccattgctcgtcagaagtgactaaagaccaacaaagctgcagcagggaggatgaattgaccaaccttgggtccttaac |
118 |
Q |
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| T |
26276571 |
accgggttctacacatttgtgtccattgctcgtcagaagtgactaaagaccaacaaagctgcagcagggaggatgaattgaccagccttgggtccttcac |
26276670 |
T |
|
| Q |
119 |
agatagacttccttcctcatttggtttacataaatccctccaagccaccgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtctttatc |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276671 |
agatagacctccttcctcatttggtttacataaatccctccaagccaccgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtctttatc |
26276770 |
T |
|
| Q |
219 |
atcttggttaactgcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatactatttatcacagaattgacaagttgtactctcc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26276771 |
atcttggttaactgcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcagcatactatttatcacagaattgacaagttgtactctcc |
26276870 |
T |
|
| Q |
319 |
ccattatagataacagcaagcctttccaaacagccaatttgactttgattctgtccacaataggtcggaaatgatgagcttttgatctgcctttgaagag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276871 |
ccattatagataacagcaagcctttccaaacagccaatttgactttgattatgtccacaataggtcggaaatgatgagcttttgatctgcctttgaagag |
26276970 |
T |
|
| Q |
419 |
agggtgcgtgattgtttctaggtgctgcttctgtaaaggccaattggagtcctctgatcatatcttcctgaactgcccggaaacagggatgttgtggagt |
518 |
Q |
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| T |
26276971 |
agggtgcgtgattgtttctaggtgctgcttctgtaaaggccaattggagtcctctgatcatatcttcctgaactgcccggaaacagggatgttgtggagt |
26277070 |
T |
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| Q |
519 |
tggttgaaagatgtggcccaacatttggacaattctagtggcgtgaatctgctgtccagttgctttgataagggtagcagatttactcatcaggttctga |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26277071 |
tggttgaaagatgtggcccaacatttggacaattctagtggcgtgaatctgctgtccagttgctttgataagggtagcagatttactcatcaggttctga |
26277170 |
T |
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| Q |
619 |
tctctgc |
625 |
Q |
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||||||| |
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| T |
26277171 |
tctctgc |
26277177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 189 - 348
Target Start/End: Original strand, 39398737 - 39398897
Alignment:
| Q |
189 |
atatcaccgctccaaataaaggtctttatcatcttggttaact-gcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatacta |
287 |
Q |
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||||| |||||| ||||||| |||||||||||||||||| | ||| || |||||| | ||||||| ||||||||||||| ||||| || ||||||||| |
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| T |
39398737 |
atatccccgctctaaataaaattctttatcatcttggttaggttgctgcagaagattggtaggccaaagataaacatgaaacgagtaaagtaacatacta |
39398836 |
T |
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| Q |
288 |
tttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaa |
348 |
Q |
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| T |
39398837 |
ctaatcaccgaattgaccagctgaactcgtcccattatagataacaataagcctttccaaa |
39398897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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