View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_40 (Length: 309)
Name: NF11168_low_40
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 5360952 - 5361206
Alignment:
| Q |
21 |
ttcatattaattgagttatgctcacgaaaattgtaattggacatttctagaatttatttatatggcaaaaatcatataagaaaagttttttaaaaggcaa |
120 |
Q |
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| T |
5360952 |
ttcatatcaattgagttgtacttataaaaattgtaatttgacatttctagaatttgtttatatggcaaaaatcatataaaaaaagttttttaaaaggcaa |
5361051 |
T |
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| Q |
121 |
tactattgtataaggaaaaacatattattggacatttctcgaattggtttatatggcaaaaaccgttcttatcaagagtttaaagattataaatggacag |
220 |
Q |
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| T |
5361052 |
tactattgtataagaaaaatcatattattggacatttctcgaattggtttatatggcaaaaaccgttcttatcaagagtttaaagattataaatggacag |
5361151 |
T |
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| Q |
221 |
tactnnnnnnncagattatacatgaaaataataaacaaatacttacaaattcatt |
275 |
Q |
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| T |
5361152 |
tactaaaaaaacagattatacatgaaaataataaacaaatacttacaaattcatt |
5361206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 5361251 - 5361285
Alignment:
| Q |
260 |
tacttacaaattcattgaatcgtaaattttttcat |
294 |
Q |
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| T |
5361251 |
tacttacaaattcattgaatcgtaaactttttcat |
5361285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 14259444 - 14259412
Alignment:
| Q |
16 |
caatgttcatattaattgagttatgctcacgaa |
48 |
Q |
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| T |
14259444 |
caatgttcatattaattgagttatgttcacgaa |
14259412 |
T |
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