View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_41 (Length: 307)
Name: NF11168_low_41
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 3895290 - 3895045
Alignment:
| Q |
1 |
gctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttg |
100 |
Q |
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| T |
3895290 |
gctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttg |
3895191 |
T |
|
| Q |
101 |
ttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895190 |
ttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacac |
3895091 |
T |
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| Q |
201 |
agaacctgctgcttcattggttctgtcttttacctcataagcatag |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895090 |
agaacctgctgcttcattggttctgtcttttacctcataagcatag |
3895045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 3895056 - 3894962
Alignment:
| Q |
115 |
tcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacagaacctgc |
209 |
Q |
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||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || | |||||||||| ||||||| ||||||| |||||||| |
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| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgccttctctgcagctctgtctgttccttctttggctttctcccacattgaacctgc |
3894962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 3895331 - 3895205
Alignment:
| Q |
26 |
cttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcata |
125 |
Q |
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||||||| ||||| ||||| |||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
3895331 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcata |
3895232 |
T |
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| Q |
126 |
atctctagccttctctccagcattctc |
152 |
Q |
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||||| |||||||||||||||| |
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| T |
3895231 |
gtctcttatactctctccagcattctc |
3895205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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