View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_43 (Length: 296)
Name: NF11168_low_43
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 21296555 - 21296769
Alignment:
| Q |
21 |
aagttatatagcacaacgtgaagaaacctacacaactgtaaaacaaatttaaggtttaattcttgtcaattannnnnnnaaggtttaattcaatttcaat |
120 |
Q |
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| T |
21296555 |
aagttatatagcacaacgtggagaaacctacacaactgtaaaacaaatttaaggtttaattcttgtcaattatttttttaaggtttaattcaatttcaat |
21296654 |
T |
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| Q |
121 |
ctcataattattctcatttacgattttgaacactcatttctaaatatgcaatctggacccctctatttatcaaattacgtgattttgatccatccattaa |
220 |
Q |
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| T |
21296655 |
ctcataattattctcatttacgattttgaacactcatttgtaaatatgcaatctggacccctctatttatcaaattacgtgattttgatccatccatcaa |
21296754 |
T |
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| Q |
221 |
agtgacatccaattc |
235 |
Q |
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| T |
21296755 |
agtgacatccaattc |
21296769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 21296788 - 21296822
Alignment:
| Q |
247 |
gaataatgtaacaatgctatattcaatatcttcat |
281 |
Q |
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| T |
21296788 |
gaataatgtaacaatgctatattcaatatcttcat |
21296822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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