View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_45 (Length: 288)
Name: NF11168_low_45
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 44471768 - 44471493
Alignment:
| Q |
1 |
atttgttatattaaaatattatagttctatgcaattaactaaaattagtctctatatatatgtagtgtaatagactaagnnnnnnnnnnngtggacagtg |
100 |
Q |
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| T |
44471768 |
atttgttatattaaaatattatagttctatgcaattaactaaaattagtctctatat----gtagtgtaagagactaagtttttttttttgtggacagtg |
44471673 |
T |
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| Q |
101 |
taagagactaatgtaaatctcatnnnnnnntgtaacttgattattca---tcttttttaaagagatttgtttatttcttagtttttcttccgtattaaaa |
197 |
Q |
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| T |
44471672 |
taagagactaatgtaaatctcataaaaaaatgtaacttgatcattcaatatattttttaaagaaatttgtttatttcttagtttttcttccgtattaaaa |
44471573 |
T |
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| Q |
198 |
cagttattagctggtaaaaacaaacagtaattag-aagcaaccttatttgagcctacctagctagccctaatacgtatta |
276 |
Q |
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| T |
44471572 |
cagttattagctggtaaaaacaaacagtaattagaaaggaaccttattcgagcctacctagctagccctaatacgtatta |
44471493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 44476199 - 44476122
Alignment:
| Q |
199 |
agttattagctggtaaaaacaaacagtaattagaagcaaccttatttgagcctacctagctagccctaatacgtatta |
276 |
Q |
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| T |
44476199 |
agttattagctggtaaaaacaaacagcaattaaaagctatcttatttgagccaacctagctagccctaatacgtatta |
44476122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44476354 - 44476305
Alignment:
| Q |
1 |
atttgttatattaaaa-tattatagttctatgcaattaactaaaattagt |
49 |
Q |
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| T |
44476354 |
atttgttatattaaaaatattctagttctatgcaattaactaaaattagt |
44476305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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