View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_46 (Length: 270)
Name: NF11168_low_46
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 50905598 - 50905839
Alignment:
| Q |
14 |
agatagcagaaaagctgtactctgataattgaatttttaatttcaacatctgtatatatttcgttttaaataattgcagtcttttgaagaaagtctagga |
113 |
Q |
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| T |
50905598 |
agatagcagaaaagctgtactctgataattgaatttttaatttcaacatctgtatatatttcgttttaaataattgcagtcttttgaagaaagtctagga |
50905697 |
T |
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| Q |
114 |
acaactgctttgacataaggaggagtatagatcaaaacttgaacttgtaccaaagtttgttcgatgactttttctgcatataagataattagccagtaga |
213 |
Q |
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| T |
50905698 |
acaactgctttgacataaggaggagtatagatcaaaacttgaacttgtaccaaagtttgttcgatgactttttctgcatataagataattagccagtaga |
50905797 |
T |
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| Q |
214 |
accttgattcatgaaactgcattaaactggcatgtgatgtct |
255 |
Q |
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| T |
50905798 |
accttgattcatgaaactgcattaaactggcatgtgatgtct |
50905839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 38043295 - 38043085
Alignment:
| Q |
33 |
ctctgataattgaatttttaatttcaacatctgtatatatttcgttttaaataattgcagtcttttgaagaaagtctaggaacaactgctttga------ |
126 |
Q |
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| T |
38043295 |
ctctgaaaattgaatttttaatttcaacatacctatatatttcgttttaaataattgtagtcttttgaagaaattccagtaacaactgctttgacatgac |
38043196 |
T |
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| Q |
127 |
cataaggaggagtatagatcaaaacttgaacttgtaccaaagtttgttcgatga-----ctttttctgcatataagataattagccagtagaaccttgat |
221 |
Q |
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| T |
38043195 |
cataaggaggactacggctaaaaacattaacttg-accaaagtttgttctatgatttttcttcttctgcatatatgataattagccagtagaaccttcat |
38043097 |
T |
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| Q |
222 |
tcatgaaactgc |
233 |
Q |
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| T |
38043096 |
taatgaaactgc |
38043085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 55087303 - 55087247
Alignment:
| Q |
73 |
ttcgttttaaataattgcagtcttttgaagaaagtctaggaacaactgctttgacat |
129 |
Q |
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| T |
55087303 |
ttcgttttaaataagtgcagtcttttgaagaatgtctagcaacaactgctttgacat |
55087247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 48839436 - 48839493
Alignment:
| Q |
68 |
tatatttcgttttaaataattgcagtcttttgaagaaagtctaggaacaactgctttg |
125 |
Q |
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| T |
48839436 |
tatattttgtttgaaataattgcagtctatcgaagaaagtctagcaacagctgctttg |
48839493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 50914446 - 50914406
Alignment:
| Q |
68 |
tatatttcgttttaaataattgcagtcttttgaagaaagtc |
108 |
Q |
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| T |
50914446 |
tatatttagtttaaaataattgcagtcttttgaggaaagtc |
50914406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 3071239 - 3071293
Alignment:
| Q |
66 |
tatatatttcgttttaaataattgcagtcttttgaagaaagtctaggaacaactg |
120 |
Q |
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| T |
3071239 |
tatatgttttgttttaaataattgcagtcttttgaataaagtctagcaacaactg |
3071293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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