View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11168_low_47 (Length: 270)

Name: NF11168_low_47
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11168_low_47
NF11168_low_47
[»] chr4 (2 HSPs)
chr4 (17-139)||(30142086-30142208)
chr4 (17-121)||(19800295-19800399)
[»] chr3 (2 HSPs)
chr3 (17-139)||(30742501-30742623)
chr3 (241-270)||(30742720-30742749)
[»] chr5 (2 HSPs)
chr5 (17-121)||(22303082-22303186)
chr5 (241-270)||(22302954-22302983)
[»] chr2 (2 HSPs)
chr2 (94-139)||(22806202-22806247)
chr2 (241-270)||(22806344-22806373)
[»] chr8 (2 HSPs)
chr8 (89-127)||(24030853-24030891)
chr8 (241-270)||(24030715-24030744)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 30142208 - 30142086
Alignment:
Q  17 tcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaaaccgataaacgctgctccagttatgccctgcgcaatgaaag 116  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||    
T  30142208 tcaacatgaaagttgtagcattttctcttagctttccaacgcatggtcgcgggcctcaaaccgataaacacagctccagttatgccctgcacaatgaaag 30142109  T
Q  117 gtgtccaattagtgtttattcag 139  Q
     |||| ||||| |||||||||||    
T  30142108 atgtcaaattactgtttattcag 30142086  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 19800399 - 19800295
Alignment:
Q  17 tcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaaaccgataaacgctgctccagttatgccctgcgcaatgaaag 116  Q
    |||||||||||||| ||| |||| |||||||||||||| | |||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  19800399 tcaacatgaaagttctagaattttctcttagctttccagcgcatggtcgcgggcctcaaaccgataaacggagctccagttatgccctgcgtaatgaaag 19800300  T
Q  117 gtgtc 121  Q
    |||||    
T  19800299 gtgtc 19800295  T

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Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 30742501 - 30742623
Alignment:
Q  17 tcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaaaccgataaacgctgctccagttatgccctgcgcaatgaaag 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||  |||||||||| |||| |||||||||||    
T  30742501 tcaacatgaaagttgtagcatttgctcttagctttctaacacatggtcgcgggcctcaaactgataaatgcaactccagttataccctacgcaatgaaag 30742600  T
Q  117 gtgtccaattagtgtttattcag 139  Q
    ||||| ||||| |||||||||||    
T  30742601 gtgtcaaattattgtttattcag 30742623  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 30742720 - 30742749
Alignment:
Q  241 catagcataagatagaagaaagtacattaa 270  Q
    ||||||||||||||||||||||||||||||    
T  30742720 catagcataagatagaagaaagtacattaa 30742749  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 22303186 - 22303082
Alignment:
Q  17 tcaacatgaaagttgtagcatttgctcttagctttccaacacatggtcgcgggcctcaaaccgataaacgctgctccagttatgccctgcgcaatgaaag 116  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  22303186 tcaacatgaaagttgtagcattttctcttagctttccaacgcatggttgtgggcctcaaaacgataaacgcagctccagttatgccctgcgcaatgaaag 22303087  T
Q  117 gtgtc 121  Q
    |||||    
T  22303086 gtgtc 22303082  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 22302983 - 22302954
Alignment:
Q  241 catagcataagatagaagaaagtacattaa 270  Q
    ||||||||||||||||||||||||||||||    
T  22302983 catagcataagatagaagaaagtacattaa 22302954  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 22806202 - 22806247
Alignment:
Q  94 agttatgccctgcgcaatgaaaggtgtccaattagtgtttattcag 139  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  22806202 agttatggcctgcgcaatgaaaggtgtccaattactgtttattcag 22806247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 22806344 - 22806373
Alignment:
Q  241 catagcataagatagaagaaagtacattaa 270  Q
    ||||||||||||||||||||||||||||||    
T  22806344 catagcataagatagaagaaagtacattaa 22806373  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 24030891 - 24030853
Alignment:
Q  89 gctccagttatgccctgcgcaatgaaaggtgtccaatta 127  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  24030891 gctcgagttatgccctgcgcaatgaaaggtgtcaaatta 24030853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 24030744 - 24030715
Alignment:
Q  241 catagcataagatagaagaaagtacattaa 270  Q
    ||||||||||||||||||||||||||||||    
T  24030744 catagcataagatagaagaaagtacattaa 24030715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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