View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_50 (Length: 265)
Name: NF11168_low_50
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 9909497 - 9909742
Alignment:
| Q |
1 |
ttttacgtttctattttatgaggaaaggtcattcttcctctataaattaagaagagtatagactaaaattcacatccattcttctcaaaataaattacca |
100 |
Q |
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| T |
9909497 |
ttttacgtttctattttatggggaaaggtaatttttcctctataatttaagaagagtatagactaaaattcacatccattcttctcaaaataaattacca |
9909596 |
T |
|
| Q |
101 |
ccattattcaatagtcaaatttaagtcctaaagcagtatggagcatggaagttcctcatttaacaacaaccgttcaacacaatcaagctatggtaagcac |
200 |
Q |
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| T |
9909597 |
ccattattcaatagtcaaatttaagtcctaaagcagtatggagcatggaagttcctcatttaacaacaa-cgttcaacacaagcaagctatggtaagcac |
9909695 |
T |
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| Q |
201 |
tttaaacnnnnnnnnttatacatttgtatctctttataacgagtaatt |
248 |
Q |
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| T |
9909696 |
tttaaac-aaaaaaattatacatttgtatctctttataatgagtaatt |
9909742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 9919758 - 9919964
Alignment:
| Q |
1 |
ttttacgtttctattttatgaggaaaggtcattcttcctctataaattaagaagagtatagactaaaattcacatccattcttctcaaaataaattacca |
100 |
Q |
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| T |
9919758 |
ttttacgtttctattttatggggaaaggtcattcttcctctataaattaataagagtatagactaaaattcacatctattcttcttaaaataaattacca |
9919857 |
T |
|
| Q |
101 |
ccattattcaatagtcaaatttaagtcctaaagcagtatggagcatggaagttcctcatttaacaacaaccgttcaacacaatcaagctatggtaagcac |
200 |
Q |
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| T |
9919858 |
ccattgttcaataatcaaatttaagtcctaaatcattatggaacgtggaagtccttcatctaacaacaaccgttcggcacactcaagctctggtaagcac |
9919957 |
T |
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| Q |
201 |
tttaaac |
207 |
Q |
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| T |
9919958 |
tctaaac |
9919964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 9930082 - 9930140
Alignment:
| Q |
38 |
ctctataaattaagaagagtatagactaaaattcacatccattcttctcaaaataaatt |
96 |
Q |
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| T |
9930082 |
ctctataaattcagaagagtgcagaccaaaattctcaaccattcttctcaaaacaaatt |
9930140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 9635413 - 9635377
Alignment:
| Q |
171 |
cgttcaacacaatcaagctatggtaagcactttaaac |
207 |
Q |
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| T |
9635413 |
cgttcaacacaatcaagctctggtaagcaccttaaac |
9635377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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