View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_low_55 (Length: 253)
Name: NF11168_low_55
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 42677501 - 42677349
Alignment:
| Q |
1 |
ctaaaaatcattatcaagcacattaaaggttcctacgacactagttaatgttttgaattgacagtgcagaatcatgcatcacttatttaacaagtatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42677501 |
ctaaaaatcattatcaagcacattaaaggttcctacgacaccagttaatgttttgaattgacagtgcagaatcatgcatcacttatttaacaagtatcca |
42677402 |
T |
|
| Q |
101 |
ttctctaacatcaaaacaagcaacac-aaaaccctttctcagtaaagaaggga |
152 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
42677401 |
ttctctaacatcaaaacatgtaacacaaaaaccctttctcagtaaagaaggga |
42677349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University