View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_56 (Length: 252)
Name: NF11168_low_56
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 49543362 - 49543603
Alignment:
| Q |
1 |
tttttcttttagctgtaccagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattattcaattattaacaatcaatttt |
100 |
Q |
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| T |
49543362 |
tttttcttttagctgtaccagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattattcaattattaacaatcaatttt |
49543461 |
T |
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| Q |
101 |
tgttgttcaattttggctaatgactgagtatggatgagtcaaaaactttggctgatatgaaaagagtatggatttctaagaagttttcaacatttatgaa |
200 |
Q |
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| T |
49543462 |
tattgttcaattttggttaatgactgagtatggatgagtcaaaaactttggctgatatgaaaagagtatggatttctaagaagttttcaacatttatgaa |
49543561 |
T |
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| Q |
201 |
gcttctccttctaaaaacttggccttctttatgcaatctctg |
242 |
Q |
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| T |
49543562 |
gcttctccttctaaaaacttggccttctttatgcaatctctg |
49543603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 47609130 - 47609362
Alignment:
| Q |
1 |
tttttcttttagctgtaccagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattattcaattattaacaa-tcaattt |
99 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||| |
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| T |
47609130 |
tttttcttttagctgtaccagtttgatttt-----attcaaaaccatttttcaaccggtcctacttgtttcctattattcgattattaacaaataaattt |
47609224 |
T |
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| Q |
100 |
ttgttgttcaattttggctaatgactgagtatggatgagtcaaaaactttggctgatatgaaaagagtatggatttctaagaagtttt-caacatttatg |
198 |
Q |
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| T |
47609225 |
ttgttgttcgattttgattaatgacag------gatgagtcaaaaactttggctgatatgaagagagtatggatttctaagaagttttcctacatttatg |
47609318 |
T |
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| Q |
199 |
aagcttctccttctaaaaacttggccttctttatgcaatctctg |
242 |
Q |
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| T |
47609319 |
aagcttctccttctaaaaacttggccttctttatgcaatctctg |
47609362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 52892962 - 52892727
Alignment:
| Q |
2 |
ttttcttttagctgtaccagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattattcaattattaacaatcaattttt |
101 |
Q |
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|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52892962 |
ttttcttttaggtgttccagtttggtttggtttgattcaaaaccatttttcaaccagtcctacttgtttcctattatttggttattaacaatcaattttt |
52892863 |
T |
|
| Q |
102 |
gttgttcaattttggctaatgactgagtatggatgagtcaaaaactttggctgatatgaaaagagtatggatttctaagaagtttt-caacatttatgaa |
200 |
Q |
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||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||| |
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| T |
52892862 |
gttgttcaattttggttaatgac------aggatgagtcgaaaactttggctgatatgaagagagtatggatttctaagaaattttcctacatttatgaa |
52892769 |
T |
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| Q |
201 |
gcttctccttctaaaaacttggccttctttatgcaatctctg |
242 |
Q |
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|||| |||||||| || ||||||||| |||||||||||||| |
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| T |
52892768 |
gcttgtccttctaccaagttggccttcattatgcaatctctg |
52892727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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