View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_low_59 (Length: 250)
Name: NF11168_low_59
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_59 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 38712739 - 38712979
Alignment:
| Q |
11 |
cataggctagatacaaaatgaaaactataaaagagtggctaattgagcttagatgcagctataatctcaacacataatgcacaataaacataatatttta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712739 |
cataggctagatacaaaatgaaaactataaaagagtggctaattgagcttagatgcagctataatctcaacacataatgcacaataaacataatatttta |
38712838 |
T |
|
| Q |
111 |
aaagtaaaattaatatttaatcact-gccattacttgccttatggaaccatcaataagatacctagctaattatttcagaaatttaatcgaagctagaaa |
209 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712839 |
aaagtaaaattaatattcaatcactggccattacttgccttatggaaccatcaataagatacctagctaattatttcagaaatttaatcgaagctagaaa |
38712938 |
T |
|
| Q |
210 |
taatttaattgtcagagccatgacaaacattaaacaatgtc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38712939 |
taatttaattgtcagagccatgacaaacattaaacaatgtc |
38712979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University