View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11168_low_61 (Length: 249)
Name: NF11168_low_61
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 5630607 - 5630794
Alignment:
| Q |
11 |
caaaggaaggtggaactgaggaatgaacattagaccaacttgagacaagcctttgttccattgtttccatgtctctacagaatttgagagacacgaacaa |
110 |
Q |
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| T |
5630607 |
caaaggaaggtggaactgaggaatgaacattagaccaacttgagacaagcctttgttccattgtttccatgtctctacagaatttgagagacacaaacaa |
5630706 |
T |
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| Q |
111 |
caatgtcctttgaagaaaaataagagttttcacatgttgattgcgtcattttatagttatacatacatgtggcgatgtgaaccatgca |
198 |
Q |
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| T |
5630707 |
caatgtcctttgaagaaaaataagagttttcacatgttgattgcgtcattttatagttatacatacatgtggcgatgtgaaccatgca |
5630794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 16433147 - 16433013
Alignment:
| Q |
13 |
aaggaaggtggaactgaggaatgaacattagaccaacttgagacaagcctttgttccattgtttcca------------tgtctctacagaatttgagag |
100 |
Q |
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| T |
16433147 |
aaggaaggtggaactgaggaattaacattagaccaacttgagataagcctttgttccattgtttccatgtttcctatgttgtctctatagaatttgagag |
16433048 |
T |
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| Q |
101 |
acacgaacaacaatgtcctttgaagaaaaataaga |
135 |
Q |
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| T |
16433047 |
acacaaacaacaatgtcatttgaagaaaaataaga |
16433013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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