View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11168_low_65 (Length: 243)
Name: NF11168_low_65
Description: NF11168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11168_low_65 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 36904746 - 36904974
Alignment:
| Q |
1 |
cataagatgtcacaaggaatagaaaagattcgattcatggtggtcctacaagcagaaaatgagtttgaggcattgagatgcaaaggaaaattaacttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36904746 |
cataagatgtcacaaggaatagaaaagattcgattcatggtggtcctacaagcagaaaatgagtttgaggcattgagatgcaaaggaaaattaacttgga |
36904845 |
T |
|
| Q |
101 |
tgtaatggaaattaatgtaaaagtctttcctaaaaggatcatcttttgggattgtaaaggttggatcttcgattggacttattgtgaacgaaatatcaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36904846 |
tgtaatggaaattaatgtaaaagtctttcctaaaaggatcatcttttgggattgtaaaggttggatcttcgattggacttattatgaacgaaatatcaga |
36904945 |
T |
|
| Q |
201 |
atccatgatgagtgatcggttattctttt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36904946 |
atccatgatgagtgatcggttattctttt |
36904974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 37073029 - 37072841
Alignment:
| Q |
1 |
cataagatgtcacaaggaatagaaaagattcgattcatggtggtcctacaagcagaaaatgagtttgaggcattgagatgcaaaggaaaattaacttgga |
100 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37073029 |
cataagatgttacaaggaataaaaaagattcgattcatggtggtactacaagcagaaaatgagtttgaggcattgagatgcaagggaaaattaacttgga |
37072930 |
T |
|
| Q |
101 |
tgtaatggaaattaatgtaaaagtctttcctaaaaggatcatcttttgggattgtaaaggttggatcttcgattggacttattgtgaac |
189 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
37072929 |
tgtaatggaaattaatgtaaaagtctttactaaaaggatcatcttttgagattgtaaaggttggttcttcgattgaacttattctgaac |
37072841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 37493766 - 37493948
Alignment:
| Q |
1 |
cataagatgtcacaaggaatagaaaagattcgattcatggtggtcctacaagcagaaaatgagtttgaggcattgagatgcaaaggaaaattaacttgga |
100 |
Q |
| |
|
|||||||||||||||||||| | | |||| ||| ||| || ||| |||||| || |||||| |||| |||||||||||||| ||||| |||| ||||| |
|
|
| T |
37493766 |
cataagatgtcacaaggaatcaacaggatttgatacatcgtagtcttacaagtcgataatgagattgatgcattgagatgcaagggaaagttaaattgga |
37493865 |
T |
|
| Q |
101 |
tgtaatggaaattaatgtaaaagtctttcctaaaaggatcatcttttgggattgtaaaggttggatcttcgattggacttatt |
183 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
37493866 |
tgtaatggaaattaatgtaaaagtgattactaaaaggatcatcttttgggattgtaaatgttggttcttcggttggacttatt |
37493948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 37076784 - 37076610
Alignment:
| Q |
1 |
cataagatgtcacaaggaatagaaaagattcgattcatggtggtcctacaagcagaaaatgagtttgaggcattgagatgcaaaggaaaattaacttgga |
100 |
Q |
| |
|
|||||||||||||||||||| | |||| | ||||||||||||||||||| || | |||||||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
37076784 |
cataagatgtcacaaggaatcaatgggatttgcttcatggtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaaaactaacttgaa |
37076685 |
T |
|
| Q |
101 |
tgtaatggaaattaatgtaaaagtctttcctaaaaggatcatcttttgggattgtaaaggttggatcttcgattg |
175 |
Q |
| |
|
|||||| ||| ||||||||||||| || |||||||||||||||||||||||||||| |||||| | |||||||| |
|
|
| T |
37076684 |
tgtaatagaacttaatgtaaaagtagttgctaaaaggatcatcttttgggattgtaatggttggtttttcgattg |
37076610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 41371877 - 41371966
Alignment:
| Q |
59 |
atgagtttgaggcattgagatgcaaaggaaaattaacttggatgtaatggaaattaatgtaaaagtctttcctaaaaggatcatcttttg |
148 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
41371877 |
atgagtttgaggcattggtatgtaaaggaaaattaacttggttgtaatggaaattaatgtaaaagtagttattaaaaggatcatcttttg |
41371966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University